Jawaharlal Nehru University
Chickpea Gene Expression Atlas Database: CaGEA (http://tgsbl.jnu.ac.in/CaGEA)
A web resource for mining/downloading full-length transcriptome sequence data (protein-coding and lncRNAs), functional annotation (gene description, PFam domain and gene ontology), tissue-specific expression profiles and co-expression network of all chickpea transcripts.
A web resource for mining/downloading full-length transcriptome sequence data (protein-coding and lncRNAs), functional annotation (gene description, PFam domain and gene ontology), tissue-specific expression profiles and co-expression network of all chickpea transcripts.
Morus indica Genome Project: MindGP (http://tgsbl.jnu.ac.in/MindGP)
Draft genome sequence and annotation of Morus indica (K2) genome along with gene expression profiles and high-density map of DNA polymorphisms (SSRs, SNPs and InDels).
Draft genome sequence and annotation of Morus indica (K2) genome along with gene expression profiles and high-density map of DNA polymorphisms (SSRs, SNPs and InDels).
High-depth whole genome resequencing of 18 important chickpea genotypes including both desi and kabuli types
Web resource for draft genome sequence and annotation of Oryza coarctata (wild halophyte rice) genome
Singh, U., Khemka, N., Rajkumar, M. S., Garg, R., & Jain, M. (2017). PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea. Nucleic Acids Research, 45(22),e183. [Article]
National Institute of Plant Genome Research
Patel RK, Jain M(2012). NGS QC Toolkit: A toolkit for quality control of next generation sequencing data. PLoS ONE, 7(2): e30619.
Patel RK, Jain M(2011). PlantRGS: A web server for the identification of most suitable candidate reference genes for quantitative gene expression studies in plants. DNA Res., 18 (6): 463-470.
Garg R, Patel RK, Jhanwar S, Priya P, Bhattacharjee A, Yadav G, Bhatia S, Chattopadhyay D, Tyagi AK, Jain M (2011). Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development Plant Physiol., 156: 1661-1678.
Priya P, Jain M (2013). RiceSRTFDB: A database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis. Database (Oxford)., 2013: bat027.
Garg R, Verma M, Agrawal S, Shankar R, Majee M, Jain M (2014). Deep Transcriptome Sequencing of Wild Halophyte Rice, Porteresia coarctata , Provides Novel Insights into the Salinity and Submergence Tolerance Factors. DNA Res. 21: 69-84.
