Review articles

  • Ghangal, Rajesh, Vikash K. Singh, Niraj K. Khemka, Mohan Singh Rajkumar, Rohini Garg, and Mukesh Jain. (2020) Updates on Genomic Resources in Chickpea for Crop Improvement.  Methods in Molecular Biology 2107: 19–33.
  • Khemka, Niraj K., Urminder Singh, Anuj K. Dwivedi, and Mukesh Jain. (2020) Machine Learning-Based Annotation of Long Noncoding RNAs Using PLncPRO. Methods in Molecular Biology 2107: 253–60.
  • Kumar V, Jain M. (2015) The CRISPR-Cas system for plant genome editing: advances and opportunities. Journal of Experimental Botany 66, 47-57. doi: 10.1093/jxb/eru429. 
  • Jain M. (2015) Function genomics of abiotic stress tolerance in plants: A CRISPR approach. Frontiers in Plant Science 6, 375. doi: 10.3389/fpls.2015.00375. 
  • Garg R, Varshney R, Jain M. (2014). Molecular genetics and genomics of abiotic stress responses. Frontiers in Plant Science 5, 398. doi: 10.3389/fpls.2014.00398. 
  • Garg R, Jain M. (2013) Transcriptome analyses in legumes: A resource for functional genomics. The Plant Genome 6, doi: 10.3835/plantgenome2013.04.0011. 
  • Garg R, Jain M. (2013). RNA-seq for transcriptome analysis in non-model plants. Methods in Molecular Biology 1069, 43-58.
  • Jain M. (2012). Next generation sequencing technologies for gene expression profiling in plants. Briefings in Functional Genomics 2, 63-70. 
  • Jain M. (2011). A next generation approach to the characterization of a non-model plant transcriptome. Current Science 101, 1435-1439. 
  • Jain M. (2013). Emerging role of metabolic pathways in abiotic stress tolerance. J Plant Biochem Physiol 1, 108. 
Edited Books



Abiotic Stress: Molecular Genetics and Genomics
(ISBN 978-2-88919-359-2)


Pulse Improvement: Physiological, Molecular and Genetic Perspectives
(ISBN 978-3-030-01742-2)


Legume Genomics: Methods and Protocol
(ISBN 978-1-0716-0235-5)













Book Chapters/Proceedings/Reports

  • Khandelwal R, Jain M (2018). Genome engineering tools for functional genomics and crop improvement in legumes. In: Wani SH, Jain M (eds.), Pulse Improvement - Physiological, Molecular and Genetic Perspectives, Springer Nature Switzerland AG pp 219-234. ISBN 978-3-030-01742-2.
  • Gupta V, Jain M, Reddy CRK (2017). Macroalgal functional genomics: A missing area. In: Kumar M, Ralph P (eds.), Systems Biology of Marine Ecosystems, Springer pp 3-12. ISBN 978-3-319-62092-3.
  • Sharma E, Sharma R, Borah P, Jain M., Khurana JP (2015). Emerging roles of auxin in abiotic stress responses. In: Pandey GK (eds.), Elucidation of Abiotic Stress Signaling in Plants: A Functional Genomic Perspective, Springer ISBN 978-1-4939-2210-9.
  • Bhattacharjee A, Jain M. (2013). Transcription factor mediated abiotic stress signaling in rice. In: Pandey GK (eds.), Plant Stress - Stress-Mediated Signaling in Plants, Global Science Books, Academic Press, Japan. 7, 16-25.
  • Patel R, Jain M. (2013). NGS QC Toolkit: A Platform for quality control of next generation sequencing data. In: Nelson K (ed.), Encyclopedia of Metagenomics: SpringerReference, Springer-Verlag Berlin Heidelberg, DOI: 10.1007/SpringerReference_304214.
  • Bhattacharjee A, Jain M. (2013). Homeobox genes as potential candidates for crop improvement under abiotic stress. In: Tuteja N, Gill SS (eds.), Plant Acclimation to Environmental Stress, Springer Science+Business Media, New York, USA, pp 163-176.
  • Tyagi AK, Khurana JP, Khurana P, Vij S, Jain M., Vaidhyanathan R (2007). Evolution and phylogenetic relationship of the rice genome. In: Sharma AK, Sharma A (eds.), Plant Genome: Biodiversity and Evolution (Volume IE-Phanerogam-Angiosperm), Science Publishers, New Hampshire, USA, pp 15-41.
  • Khurana JP, Jain M., Tyagi AK (2007). Auxin and cytokinin signaling component genes and their potential for crop improvement. In: Varshney RK, Tuberosa R (eds.), Genomics-Assisted Crop Improvement (Volume I-Genomics Approaches and Platforms), Springer Verlag, Germany, pp 289-314.
  • Chandra A, Jain M., Bhatt V, Vora J, Ghawna S, Ahuja PS (2007). Frontiers of plant biology research (Meeting report on ISPMB 2006). Current Science 92, 1331-1335.
  • Khurana JP, Jain M. (2007). Understanding plant reproductive pathways-molecular genetic analysis of floral induction and flower development. In: Chopra VL, Sharma RP, Bhat SR, Prasanna BM (eds.) Search for New Genes, Academic Foundation & National Academy of Agricultural Sciences, New Delhi. pp 173-195.
  • Tyagi AK, Khurana JP, Khurana P, Kapoor S, Singh VP, Singh AK, Thakur JK, Gupta V, Anand S, Vij S, Jain M., Ray S, Agarwal P, Arora R, Sharma P, Mukherjee S, Nijhawan A, Giri J, Khurana R (2007). Expression and functional analysis of rice genes involved in reproductive development and stress response. In: Brar DS, Mackill DJ, Hardy B (eds.), Rice Genetics V, International Rice Research Institute, Philippines, pp 313-330

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Professor Mukesh Jain

Room No. 21
School of Computational and Integrative Sciences
Jawaharlal Nehru University, New Delhi-110067. INDIA
Off. Phone : 91 11 26704686
Email: mjain@jnu.ac.in mjainanid@gmail.com