No records
Rajkumar MS, Tembhare K, Garg R, Jain M. (2024) Genome-wide mapping of DNase I hypersensitive sites revealed differential chromatin accessibility and regulatory DNA elements under drought stress in rice cultivars. The Plant Journal
2024
Garg R, Subudhi PK, Varshney R, Jain M (2023). Abiotic Stress: Molecular genetics and genomics. Frontiers in Plant Science
2023
Tiwari S, Jain M, Singla-Pareek S, Bhalla PL, Singh M, Pareek A. (2023) Pokkali - a naturally evolved salt-tolerant rice shows a distinguished set of lncRNAs possibly contributing to the tolerant phenotype. International Journal of Molecular Sciences 24, 11677. doi: 10.3390/ijms241411677.
2023
Garg T, Yadav M, Mushahary KKK, Kumar A, Pal V, Singh H, Jain M, Yadav SR. (2023) Spatially activated conserved auxin-transcription factor regulatory module controls de novo root organogenesis in rice. Planta
2023
Singh V, Gupta K, Singh S, Jain M, Garg R. (2023) Unravelling the molecular mechanism underlying drought stress response in chickpea via integrated multi-omics analysis. Frontiers in Plant Science
2023
Shankar R, Dwivedi A, Singh V, Jain M . (2023) Genome-wide discovery of genetic variations between rice cultivars with contrasting drought stress response and their potential functional relevance. Physiologia Plantarum
2023
Dwivedi A, Singh V, Anwar K, Pareek A, Jain M. (2023) Integrated transcriptome, proteome and metabolome analyses revealed auxiliary carbohydrate metabolism augmenting drought tolerance in rice. Plant Physiology and Biochemistry doi: 10.1016/j.plaphy.2023.107849.
2023
Rajkumar MS, Garg R† , Jain M † . (2022) Genome-wide discovery of DNA polymorphisms via resequencing of chickpea cultivars with contrasting response to drought stress. Physiologia Plantarum † Joint corresponding author
2022
Kandhol N, Jain M , Tripathi DK. Nanoparticles as potential hallmarks of drought stress tolerance in plants. Physiol Plant.
2022
Jain M , Bansal J, Rajkumar MS, Sharma N, Khurana JP, Khurana P. Draft genome sequence of Indian mulberry (Morus indica) provides a resource for functional and translational genomics. Genomics
2022
Garg T, Singh Z, Chennakesavulu K, Mushahary KKK, Dwivedi AK, Varapparambathu V, Singh H, Singh RS, Sircar D, Chandran D, Prasad K, Jain M , Yadav SR. Species-specific function of conserved regulators in orchestrating rice root architecture. Development
2022
Singh V, Jain M. Recent advancements in CRISPR-Cas toolbox for imaging applications. Crit Rev Biotechnol.
2022
Jain M, Bansal J, Rajkumar MS, Garg R. (2022) An integrated transcriptome mapping the regulatory network of coding and long non-coding RNAs provides a genomics resource in chickpea. Communications Biology
2022
Khemka N, Rajkumar MS, Garg R, Jain M . (2022) Genome-wide analysis suggests role of lncRNAs during seed development and seed size/weight determination in chickpea. Planta
2022
Bhattacharjee A, Srivastava P, Nath O, Jain M. (2021) Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice. Plant Molecular Biology
2021
Bhaskar A, Paul LK, Sharma E, Jha S, Jain M, Khurana JP. (2021) OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis. Plant Physiology and Biochemistry
2021
Khemka NK, Rajkumar MS, Garg R, Jain M. (2021) Genome-wide profiling of miRNAs during seed development reveals their functional relevance in seed size/weight determination in chickpea. Plant Direct Article of the week )
2021
Rajkumar MS, Garg R, Jain M. (2021) Genome resequencing reveals DNA polymorphisms associated with seed size/weight determination in chickpea. Genomics
2021
Singh, V., & Jain, M. ( 2021). Recent advancements in CRISPR-Cas toolbox for imaging applications. Critical reviews in biotechnology
2021
Rajkumar, M. S., Jain, M. , & Garg, R. (2021). Discovery of DNA polymorphisms via whole genome resequencing and their functional relevance in salinity stress response in chickpea. Physiologia plantarum
2021
Jain, M. , & Garg, R. (2021). Enhancers as potential targets for engineering salinity stress tolerance in crop plants. Physiologia plantarum
2021
Chennakesavulu, K., Singh, H., Trivedi, P. K., Jain, M. , & Yadav, S. R. (2021). State-of-the-Art in CRISPR Technology and Engineering Drought, Salinity, and Thermo-tolerant crop plants. Plant cell reports ,
2021
Jain M, Garg R. (2021) Enhancers as potential targets for engineering abiotic stress tolerance in crop plants. Physiologia Plantarum
2021
Khemka NK, Singh U, Dwivedi AK, Jain, M. (2020). Machine learning-based annotation of long noncoding RNAs using PLncPRO. Methods in molecular biology ,2107 , 253–260. https://doi.org/10.1007/978-1-0716-0235-5_12.
2020
Garg T, Singh Z, Dwivedi AK, Varapparambathu V, Singh RS, Yadav M, Chandran D, Prasad K, Jain M, Yadav SR. (2020) Genome-wide high resolution expression map and functions of key cell fate determinants reveal the dynamics of crown root development in rice. BioRxiv
2020
Bhaskarla V, Zinta G, Ford R, Jain M, Varshney R, Mantri N. (2020) Comparative root transcriptomics provide insights on drought adaptation strategies in chickpea (Cicer arietinum L.). International Journal of Molecular Sciences https://doi.org/10.3390/ijms21051781 .
2020
Ghangal R† , Rajkumar MS† , Garg R, Jain M. (2020) Genome-wide analysis of glutathione S-transferase gene family in chickpea suggests its role during seed development and abiotic stress. Molecular Biology Reports † Equal contribution
2020
Nawkarkar P, Chugh S, Sharma S, Jain M , Kajla S, Kumar S. (2020) Characterization of the chloroplast genome facilitated the transformation of Parachlorella Kessleri -I, a potential marine alga for biofuel production. Current Genomics
2020
Rajkumar MS, Shankar R, Garg R, Jain M. (2020) Bisulphite sequencing reveals dynamic DNA methylation under desiccation and salinity stresses in rice cultivars. Genomics BioRxiv
2020
Rajkumar MS, Gupta K, Khemka N, Garg R, Jain M. (2020) DNA methylation reprogramming during seed development and its functional relevance in seed size/weight determination in chickpea. Communications Biology
2020
Bansal J, Gupta K, Rajkumar MS, Garg R, Jain M . (2020) Draft genome and transcriptome analyses of wild halophyte rice Oryza coarctata provide resources for salinity and submergence stress response factors. Physiologia Plantarum
2020
Subudhi P† , Shankar R, Jain M † . (2020) Whole genome sequence analysis of rice genotypes with contrasting response to salinity stress. Scientific Reports 10.1038/s41598-020-78256-8. † Joint corresponding author
2020
Ghangal R, Singh VK, Khemka NK, Rajkumar MS, Garg R, Jain M . (2020) Updates on genomic resources in chickpea for crop improvement. Methods in Molecular Biology
2020
Sharma E, Jain M, Khurana JP. (2019) Differential quantitative regulation of specific gene groups and pathways under drought stress in rice. Genomics
2019
Neogy A, Garg T, Kumar A, Dwivedi AK, Singh H, Singh U, Singh Z, Prasad K, Jain M, Yadav SR. (2019) Genome-wide transcript profiling reveals an auxin-responsive transcription factor, OsAP2/ERF-40, promoting rice adventitious root development. Plant Cell Physiology doi: 10.1093/pcp/pcz132 .
2019
Rajkumar MS, Garg R, Jain M. (2018) Genome-wide discovery of DNA polymorphisms among chickpea cultivars with contrasting seed size/weight and their functional relevance. Scientific Reports
2018
Chai C, Shankar R, Jain M †, Subudhi P†. (2018) Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice. Scientific Reports
2018
Bhatia H, Khemka N, Jain M , Garg R. (2018) Genome-wide bisulphite-sequencing reveals organ-specific methylation patterns in chickpea. Scientific Reports doi : 10.1038/s41598-018-27979-w.
2018
Sharma C, Saripalli G, Kumar S, Gautam T, Kumar A, Rani S, Jain N, Prasad P, Raghuvanshi S, Jain M , Sharma JB, Prabhu KV, Sharma PK, Balyan HS, Gupta PK. (2018) A study of transciptome in leaf rust infected bread wheat involving seedling resistance gene Lr28. Functional Plant Biology
2018
Kaashyap M, Ford R, Kudapa H, Jain M , Edwards D, Varshney RK, Mantri N. (2018) Differential regulation of genes involved in root morphogenesis and cell wall modification is associated with salinity tolerance in chickpea. Scientific Reports
2018
Garg R, Singh VK, Rajkumar MS, Kumar V, Jain M. (2017) Global transcriptome and co-expression network analyses reveal cultivar-specific molecular signatures associated with seed development and seed size determination in chickpea. The Plant Journal
2017
Bhattacharjee A, Sharma R, Jain M. (2017) Over-expression of OsHOX24 confers enhanced susceptibility to abiotic stresses in transgenic rice via modulating stress-responsive gene expression. Frontiers in Plant Science 8, 628. doi: 10.3389/fpls.2017.00628.
2017
Singh VK, Kumar MR, Garg R, Jain M. (2017) Genome-wide identification and co-expression network analysis provide insights into the roles of auxin response factor gene family in chickpea. Scientific Reports 10.1038/s41598-017-11327-5.
2017
Singh U, Khemka N, Rajkumar MS, Garg R, Jain M. (2017) PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpea. Nucleic Acids Research 22, e183.
2017
Shankar R, Bhattacharjee A, Jain M. (2016) Transcriptome analysis in different rice cultivars provides novel insights into drought and salinity stress responses. Scientific Reports 6, 23719
2016
Bhattacharjee A, Khurana JP, Jain M. (2016) Characterization of rice homeobox genes, OsHOX22 and OsHOX24 , and over-expression of OsHOX24 in transgenic Arabidopsis suggest their role in abiotic stress response. Frontiers in Plant Science 7 , 627.
2016
Khemka N, Singh VK, Garg R, Jain M. (2016) Genome-wide analysis of long intergenic non-coding RNAs in chickpea and their potential role in flower development. Scientific Reports 6, 33297
2016
Jain M, Srivastava PL, Verma M, Ghangal R, Garg R. (2016) De novo transcriptome assembly and comprehensive expression profiling in Crocus sativus to gain insights into apocarotenoid biosynthesis. Scientific Reports 6, 22456
2016
Garg R, Shankar R, Thakkar B, Kudapa H, Krishnamurthy L, Mantri N, Varshney RK, Bhatia S, Jain M. (2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports 6, 19228.
2016
Kotwal S, Kaul S, Sharma P, Shankar R, Jain M, Dhar M. (2016) De novo transcriptome analysis of medicinally important Plantago ovata using RNA-Seq. PLoS ONE 11, e0150273.
2016
Dixit AB, Banerjee J, Srivastava A, Tripathi M, Sarkar C, Kakkar A, Jain M, Chandra S. (2016) RNA-Seq analysis of hippocampal tissues reveals novel candidate genes for drug refractory epilepsy in patients with MTLE-HS. Genomics 107, 178-188 .
2016
Ram H, Jain M , Singh A, Chattopadhyay S . (2016) Functional relationship of GBF1 with HY5 and HYH in genome-wide gene expression in Arabidopsis. Plant Molecular Biology Reporter 34, 211-220.
2016
Garg R † , Chevala VVSN, Shankar R, Jain M † . (2015) Divergent DNA methylation patterns associated with abiotic stress responses and regulation of gene expression in rice. Scientific Reports 5, 14922; † Joint corresponding authors.
2015
Bhattacharjee A, Ghangal R, Garg R, Jain M. (2015) Genome-wide analysis of homeobox gene family in legumes: Identification, gene duplication and expression profiling. PLoS ONE 10,
2015
Singh VK, Jain M. (2015) Genome-wide survey and comprehensive expression profiling of Aux/IAA gene family in chickpea and soybean. Frontiers in Plant Science 6, 918.
2015
Parida S, Verma M, Yadav SK, Ambawat S, Das S, Garg R, Jain M. (2015) Development of genome-wide informative simple sequence repeat markers for large-scale genotyping applications in chickpea and development of web resource. Frontiers in Plant Science 6, 645.
2015
Verma M, Kumar V, Patel RK, Garg R, Jain M. (2015) CTDB: An integrated chickpea transcriptome database for functional and applied genomics. PLoS ONE 10, 0136880.
2015
Singh VK, Jain M, Garg R. (2015) Genome-wide analysis and expression profiling reveals diverse roles of GH3 gene family during development and abiotic stress responses in legumes. Frontiers in Plant Science 5, 789.
2015
Garg R † , Bhattacharjee A, Jain M † . (2015) Genome-scale transcriptomic insights into molecular aspects of abiotic stress responses in chickpea. Plant Molecular Biology Reporter 33, 388-400. † Joint corresponding authors.
2015
Jain M † , Pole AK, Singh VK, Ravikumar RL, Garg R. (2015) Discovery of molecular markers for Fusarium wilt via transcriptome sequencing of chickpea cultivars. Molecular Breeding 35, 198.
2015
Parween S, Nawaz K, Roy, R, Pole AK, Suresh V, Misra G, Jain M, Yadav G, Parida SK, Tyagi AK, Bhatia S, Chattopadhyay D. (2015) An advanced draft genome assembly of a desi type chickpea ( Cicer arietinum L.). Scientific Reports 5, 12806.
2015
Gaur R, Jeena G, Shah N, Gupta S, Pradhan S, Tyagi AK, Jain M, Chattopadhyay D, Bhatia S. (2015) High density linkage mapping of genomic and transcriptomic SNPs for synteny analysis and anchoring the genome sequence of chickpea. Scientific Reports 5, 13387.
2015
Khujuria YP, Saxena MS, Gaur R, Chattopadhyay D, Jain M, Parida SK, Bhatia S. (2015) Genome-wide development and validation of polymorphic genic and genomic microsatellite markers for construction of a high-density chickpea genome map. PLoS ONE . 10,
2015
Kumar V, Jain M. (2015) The CRISPR-Cas system for plant genome editing: advances and opportunities. Journal of Experimental Botany 66, 47-57.
2015
Jain M. (2015) Function genomics of abiotic stress tolerance in plants: A CRISPR approach. Frontiers in Plant Science 6, 375
2015
Kumar V, Jain M. (2015) The CRISPR-Cas system for plant genome editing: advances and opportunities. Journal of Experimental Botany
2015
Jain M. (2015) Function genomics of abiotic stress tolerance in plants: A CRISPR approach. Frontiers in Plant Science
2015
Jain M † , Moharana KC, Shankar R, Kumari R, Garg R † . (2014) Genome-wide discovery of DNA polymorphisms in rice cultivars with contrasting drought and salinity stress response and their functional relevance. Plant Biotechnology Journal 12, 253-264.
2014
Jain M † , Chevala VVSN, Garg R . (2014) Genome-wide discovery, analysis and implications of differential regulation of conserved and novel miRNAs in chickpea via deep sequencing. Journal of Experimental Botany 65, 5945-5958.
2014
Verma M † , Ghangal R † , Sharma R, Sinha AK, Jain M. (2014) Transcriptome analysis of Catharanthus roseus for gene discovery and expression profiling. PLoS ONE 9,
2014
Garg R. Verma M, Agarwal S, Shankar R, Majee M, Jain M. (2014) Deep transcriptome sequencing of wild halophyte rice, Porteresia coarctata , provides novel insights into salinity and submergence tolerance factors. DNA Research 21, 69-84.
2014
Sharma R, Sahoo A, Devendran R, Jain M . (2014) Over-expression of a rice tau class glutathione S-transferase gene improves tolerance to salinity and oxidative stresses in Arabidopsis. PLoS ONE 9, e92900.
2014
Singh VK, Jain M. (2014) Transcriptome profiling for discovery of genes involved in shoot apical meristem and flower development. Genomics Data 2, 135-138.
2014
Ram H, Priya P, Jain M, Chattopadhyay S. (2014) Genome-wide DNA binding of GBF1 is modulated by its heterodimerizing partners, HY5 and HYH. Molecular Plant 7, 448-451.
2014
Misra G, Priya P, Bandhiwal N, Bareja N, Jain M, Bhatia S, Chattopadhyay D, Tyagi AK, Yadav G. (2014) The Chickpea Genomic Web Resource: Visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes. BMC Plant Biology 14, 315 .
2014
Kujur A, Bajaj D, Saxena MS, Tripathi S, Upadhyaya HD, Gowda CLL, Singh S, Tyagi AK, Jain M, Parida SK. (2014) An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: identification of candidate genes for seed weight in chickpea. Molecular Breeding 34, 241-265.
2014
Garg R, Varshney R, Jain M (2014). Molecular genetics and genomics of abiotic stress responses. Frontiers in Plant Science 5, 398.
2014
Garg R, Varshney R, Jain M. (2014). Molecular genetics and genomics of abiotic stress responses. Frontiers in Plant Science
2014
Singh VK, Garg R, Jain M. (2013) A global view of transcriptome dynamics during flower development in chickpea by deep sequencing. Plant Biotechnology Journal 11, 691-701.
2013
Jain M, Mishra G, Patel RK, Priya P, Jhanwar S, Khan AW, Shah N, Singh VK, Garg R , Jeena G, Sharma P, Kant C, Yadav M, Yadav G, Bhatia S, Tyagi AK, Chattopadhyay D. (2013) Draft g enome sequence of the pulse crop chickpea ( Cicer arietinum L.). The Plant Journal 74, 715-729. ( Featured and cover photo article )
2013
Sharma R, Priya P, Jain M. (2013) Modified expression of a n auxin-responsive rice CC-type glutaredoxin gene affects multiple abiotic stress responses. Planta 238, 871-884.
2013
Priya P, Jain M. (2013) RiceSRTFDB: A database of rice transcription factors containing comprehensive expression, cis -regulatory element and mutant information to facilitate gene function analysis. Database 2013, bat027.
2013
Ghangal R, Chaudhary S, Jain M, Purty RS, Sharma PC. (2013) Optimization of de novo short read assembly of seabuckthorn ( Hippophae rhamnoides L.) transcriptome. PLoS ONE 8
2013
Kujur A, Bajaj D, Saxena MS, Tripathi S, Upadhyaya HD, Gowda CLL, Singh S, Jain M, Tyagi AK, Parida SK. (2013) Functionally relevant microsatellite markers from chickpea transcription factor genes for efficient genotyping applications and trait association mapping. DNA Research 20, 355-374 .
2013
Garg R, Jain M. (2013) Transcriptome analyses in legumes: A resource for functional genomics . The Plant Genome 6,
2013
Garg R, Jain M (2013). RNA-seq for transcriptome analysis in non-model plants. Methods in Molecular Biology 1069, 43-58.
2013
Jain M (2013). Emerging role of metabolic pathways in abiotic stress tolerance. J Plant Biochem Physiol
2013
Garg R, Jain M. (2013) Transcriptome analyses in legumes: A resource for functional genomics. The Plant Genome 6
2013
Garg R, Jain M. (2013). RNA-seq for transcriptome analysis in non-model plants. Methods in Molecular Biology
2013
Jain M. (2013). Emerging role of metabolic pathways in abiotic stress tolerance. J Plant Biochem Physiol
2013
Agarwal G, Jhanwar S, Priya P, Singh VK, Saxena MS, Parida SK, Garg R, Tyagi AK, Jain M . (2012) Comparative analysis of kabuli chickpea transcriptome with desi and wild chickpea provides a rich resource for development of functional markers. PLoS ONE 7, e52443.
2012
Jhanwar S, Priya P, Garg R, Parida SK, Tyagi AK, Jain M (2012). Transcriptome sequencing of wild chickpea as a rich resource for marker development. Plant Biotechnology Journal 10, 690-702.
2012
Patel RK, Jain M (2012). NGS QC Toolkit: A toolkit for quality control of next generation sequencing data. PLoS ONE 7, e30619.
2012
Gaur R, Azam S, Jeena G, Khan AW, Chaudhary S, Jain M, Yadav G, Tyagi AK, Chattopadhyay D, Bhatia S (2012). High-throughput SNP discovery and genotyping for constructing a saturated linkage map of chickpea ( Cicer arietinum L.) . DNA Research 19, 357-373 .
2012
Garg R, Tyagi AK, Jain M (2012). Microarray analysis reveals overlapping and specific transcriptional responses to different plant hormones in rice. Plant Signaling & Behavior 7, 951-956.
2012
Sharma R, Agarwal P, Ray S, Deveshwar P, Sharma P, Sharma N, Nijhawan A, Jain M, Singh AK, Singh VP, Khurana JP, Tyagi AK, Kapoor S (2012). Expression dynamics of metabolic and regulatory components across stages of panicle and seed development in indica rice. Functional and Integrative Genomics 12, 229-248 .
2012
Jain M (2012). Next generation sequencing technologies for gene expression profiling in plants. Briefings in Functional Genomics 2, 63-70.
2012
Patel RK, Jain M (2011). PlantRGS: A web server for the identification of most suitable candidate reference genes for quantitative gene expression studies in plants. DNA Research 18, 463-470.
2011
Garg R, Jain M (2011). Pyrosequencing data reveals tissue-specific expression of lineage-specific transcripts in chickpea. Plant Signaling & Behavior 6, 1868-1870 .
2011
Garg R, Patel RK, Jhanwar S, Priya P, Bhattacharjee A, Yadav G, Bhatia S, Chattopadhyay D, Tyagi AK, Jain M (2011). Gene discovery and tissue-specific transcriptome analysis in chickpea with massively parallel pyrosequencing and web resource development. Plant Physiology 156, 1661-1678.
2011
Garg R, Patel RK, Tyagi AK, Jain M (2011). De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification. DNA Research 18, 53-63.
2011
Jain M (2011). A next generation approach to the characterization of a non-model plant transcriptome. Current Science 101, 1435-1439.
2011
Garg R, Jhanwar S, Tyagi AK, Jain M (2010). Genome-wide survey and expression analysis suggest diverse roles of glutaredoxin gene family members during development and response to various stimuli in rice. DNA Research 17, 353-367.
2010
Garg R, Sahoo A, Tyagi AK, Jain M (2010). Validation of internal control genes for quantitative gene expression studies in chickpea ( Cicer arietinum L.). Biochemical and Biophysical Research Communications 396, 283-288.
2010
Jain M † , Ghanashyam C, Bhattacharjee A (2010). Comprehensive expression analysis suggests overlapping and specific roles of rice glutathione S-transferase genes during development and stress responses. BMC Genomics 11, 73. ( † corresponding author) . ( Highly accessed article )
2010
Jain M † , Khurana JP (2009). Transcript profiling reveals diverse roles of auxin-responsive genes during reproductive development and abiotic stress in rice. FEBS Journal 276, 3148-3162. ( † corresponding author) ( 2 nd most h ighly cited article among FEBS Journal articles in last two years )
2009
Ghanashyam C, Jain M (2009). Role of auxin-responsive genes in biotic stress responses. Plant Signaling & Behavior 4, 846-848.
2009
Jain M (2009). Genome-wide identification of novel internal control genes for normalization of gene expression during various stages of development in rice. Plant Science 176, 702-706.
2009
Jain M*, Khurana JP (2008). Small RNA regulation of rice homeobox genes. Plant Signaling & Behavior 3, 1024-1025. (*corresponding author).
2008
Jain M , Tyagi AK, Khurana JP (2008). Genome-wide identification, classification, evolutionary expansion, and expression analyses of homeobox genes in rice. FEBS Journal 275, 2845-2861.
2008
Jain M , Tyagi AK, Khurana JP (2008). Constitutive expression of a meiotic recombination protein gene homolog, OsTOP6A1 , from rice confers abiotic stress tolerance in transgenic Arabidopsis plants. Plant Cell Reports 27, 767-778.
2008
Jain M , Tyagi AK, Khurana JP (2008). Differential gene expression of rice two-component signaling elements during reproductive development and regulation by abiotic stress. Functional and Integrative Genomics 8, 175-180.
2008
Nijhawan A, Jain M, Tyagi AK, Khurana JP (2008). A genomic survey and gene expression analysis of basic leucine zipper (bZIP) transcription factor family in rice. Plant Physiology 146, 333-350.
2008
Jain M, Khurana P, Tyagi AK, Khurana JP (2008). Genome-wide analysis of intronless genes in rice and Arabidopsis . Functional and Integrative Genomics 8, 69-78.
2008
Jain M , Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP (2007). F-box proteins in rice: genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiology 143, 1467-1483.
2007
Singh G, Jain M, Kulshreshtha R, Khurana JP, Kumar S, Singh P (2007). Expression analysis of genes encoding translation initiation factor 3 subunit g ( TaeIF3g ) and vesicle-associated membrane protein-associated protein ( TaVAP ) in drought tolerant and susceptible cultivars of wheat. Plant Science 173, 660-669.
2007
Sehgal A, Khurana JP, Sethi M, Ara H, Jain M (2007). Organ identity of the thalloid plant body of Griffithella hookeriana and Polypleurum stylosum –Podostemoideae (Podostemaceae). Plant Systematics and Evolution 267, 93-104.
2007
Jain M , Sharma P, Tyagi SB, Tyagi AK, Khurana JP (2007). Light regulation and differential tissue-specific expression of phototropin homologues from rice ( Oryza sativa ssp. indica ). Plant Science 172, 164-171.
2007
Jain M , Tyagi AK, Khurana JP (2006). Overexpression of putative topoisomerase 6 genes from rice confers stress tolerance in transgenic Arabidopsis plants. FEBS Journal 273, 5245-5260. ( cover photo article )
2006
Jain M , Tyagi AK, Khurana JP (2006). Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice ( Oryza sativa ). Genomics 88, 360-371.
2006
Jain M , Nijhawan A, Tyagi AK, Khurana JP (2006). Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochemical and Biophysical Research Communications 345, 646-651. ( Highly cited and second most downloaded article of BBRC in ScienceDirect )
2006
Jain M , Tyagi AK, Khurana JP (2006). Molecular characterization and differential expression of cytokinin-responsive type A response regulators in rice ( Oryza sativa ). BMC Plant Biology 6, 1. ( Highly accessed article )
2006
Jain M , Kaur N, Garg R, Thakur JK, Tyagi AK, Khurana JP (2006). Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice ( Oryza sativa ). Functional and Integrative Genomics 6, 47-59.
2006
Jain M , Kaur N, Tyagi AK, Khurana JP (2006). The auxin-responsive GH3 gene family in rice ( Oryza sativa ). Functional and Integrative Genomics 6, 36-46.
2006
Thakur JK, Jain M , Tyagi AK, Khurana JP (2005). Exogenous auxin enhances the degradation of a light down-regulated and nuclear-localized OsiIAA1, an Aux/IAA protein from rice, via proteasome . Biochimica et Biophysica Acta 1730, 196-205.
2005
Dasgupta U, Jain M , Tyagi AK, Khurana JP (2005). Regulatory elements for light-dependent and organ-specific expression of Arabidopsis thaliana PSBO1 g ene encoding 33 kDa polypeptide of the oxygen-evolving complex. Plant Science 168, 1633-1642.
2005
Agarwal SM † , Jain M † , Grover A † (2005). Genomic distribution of genes encoding 68 cytoplasmic ribosomal protein families in rice. Acta Physiologiae Plantarum 27, 439-446. ( † equal contribution)
2005
Jain M , Tyagi SB, Thakur JK, Tyagi AK, Khurana JP (2004). Molecular characterization of a light-responsive gene, breast basic conserved protein 1 ( OsiBBC1 ), encoding nuclear-localized protein homologous to ribosomal protein L13 from Oryza sativa indica . Biochimica et Biophysica Acta 1676, 182-192.
2004
Legume Genomics: Methods and Protocol