Publications

  • Structural Basis of Enhanced Facilitated Diffusion of DNA Binding Proteins in Crowded Cellular Milieu
    Pinki Dey & Arnab Bhattacherjee*. Biophysical Journal, DOI: 10.1016/j.bpj.2019.11.3388, 2019

  • Mechanism of Facilitated Diffusion of DNA Repair Proteins in Crowded Environment: Case Study with Human Uracil DNA Glycosylase
    Pinki Dey & Arnab Bhattacherjee*. The Journal of Physical Chemistry B, DOI: 10.1021/acs.jpcb.9b07342, 2019

  • Disparity in anomalous diffusion of proteins searching for their target DNA sites in a crowded medium is controlled by the size, shape and mobility of macromolecular crowders
    Pinki Dey & Arnab Bhattacherjee*. Soft Matter, DOI: 10.1039/c8sm01933a, 2019

  • Role of Macromolecular Crowding on the Intracellular Diffusion of DNA Binding Proteins
    Pinki Dey and Arnab Bhattacherjee*. Nature Scientific Reports, 8:844 | DOI:10.1038/s41598-017-18933-3 , 2018.

  • Understanding the Role of DNA Topology in Target Search Dynamics of Proteins
    Anupam Mondal & Arnab Bhattacherjee*. The Journal of Physical Chemistry B,   DOI: 10.1021/acs.jpcb.7b08199, 2017.

  • Coarse-grained models for studying protein diffusion along DNA
    Arnab Bhattacherjee*, Dana Krepel and Yaakov Levy*. WIREs Computational Molecular Science, doi: 10.1002/wcms.1262, 2016

  • Searching target sites on DNA by proteins: Role of DNA dynamics under confinement
    Anupam Mondal & Arnab Bhattacherjee*. Nucleic Acid Research, 43, 9176–9186, 2015.

  • Thermodynamic protein destabilization by GFP tagging: a case of inter-domain allostery
    Miri Sokolovski, Arnab Bhattacherjee, Naama Kessler, (Yaakov) Koby Levy, and Amnon Horovitz. Biophysical Journal. 109(6), 1157-1162, 2015.

  • Search by proteins for their DNA target site: 2. The effect of DNA conformation on the dynamics of multidomain proteins
    Arnab Bhattacherjee and Yaakov Levy. Nucleic Acid Research. 42(20), 12415-12424, 2014

  • Search by proteins for their DNA target site: 1. The effect of DNA conformation on protein sliding
    Arnab Bhattacherjee and Yaakov Levy. Nucleic Acid Research, 42(20), 12404, 2014.

  • Conformational properties and aggregation of the 1- 93 fragment of apolipoprotein A-I
    Jitka Petrlova, Arnab Bhattacherjee, Wouter Boomsma, Stefan Wallin, Jens Lagerstedt and Anders Irbäck. Protein Science DOI: 10.1002/pro.2534, 2014.

  • Hybrid Monte Carlo with Non-Uniform Step Size
    Christian Holzgräfe and Arnab Bhattacherjee and Anders Irbäck. Journal of Chemical Physics. 140, 044105, 2014.

  • Exploring protein-peptide binding specificity through computational peptide screening
    Arnab Bhattacherjee and Stefan Wallin. Plos Computational Biology 9 (10), e1003277, 2013.

  • Coupled Folding-Binding in a Hydrophobic/Polar Protein Model: Impact of Synergistic Folding and Disordered Flanks
    Arnab Bhattacherjee and Stefan Wallin. Biophysical Journal. 102, 569, 2012.

  • Role of Conformational Heterogeniety on Protein Misfolding
    Anupaul Baruah, Arnab Bhattacherjee and Parbati Biswas. Soft Matter 8 (16), 4432, 2012.

  • Designing MisFolded Protein Sequences by Energy Landscaping
    Arnab Bhattacherjee and Parbati Biswas. Journal of Physical Chemistry B. 115 (1), 113, 2011.

  • Role of Foldability and Stability in Designing Real Protein Sequences
    Arnab Bhattacherjee and Parbati Biswas. Physical Chemistry Chemical Physics. 13, 9223, 2011. Selected in the list of Top 20 Articles,in the Domain of Article 21468433, Since its Publication (2011)

  • Neutrality and Evolvability of Designed Protein Sequences
    Arnab Bhattacherjee and Parbati Biswas. Physical Review E. 82, 011906, 2010. Also selected for 15th July 2010 issue of Virtual Journal of Biological Physics Research

  • Statistical Theory of Neutral Protein Evolution by Random Site Mutations
    Arnab Bhattacherjee and Parbati Biswas. Journal of Chemical Sciences. 121 (5), 887, 2009.

  • Combinatorial Design of Protein Sequences with Application to Lattice and Real Proteins
    Arnab Bhattacherjee and Parbati Biswas. Journal of Chemical Physics. 131, 125101, 2009.Also selected for 1st October 2009 issue of Virtual Journal of Biological Physics Research.

  • Statistical Theory of Protein Sequence Design by Random Mutation
    Arnab Bhattacherjee and Parbati Biswas. Journal of Physical Chemistry B. 113 (16), 5520, 2009.