Journals/Research Articles

1. Bhaskar A, Paul LK, Sharma E, Jha S, Jain M, Khurana JP. (2021) OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis. Plant Physiology and Biochemistry 161, 98-112. doi: 10.1016/j.plaphy.2021.01.047.
2. Khemka NK, Rajkumar MS, Garg R, Jain M. (2021) Genome-wide profiling of miRNAs during seed development reveals their functional relevance in seed size/weight determination in chickpea. Plant Direct 5:e00299. doi: 10.1002/pld3.299. (Article of the week in Plant Direct)
3. Bhattacharjee A, Srivastava P, Nath O, Jain M. (2021) Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice. Plant Molecular Biology 105, 205-214. doi: 10.1007/s11103-020-01078-9.
4. Rajkumar MS, Garg R, Jain M. (2021) Genome resequencing reveals DNA polymorphisms associated with seed size/weight determination in chickpea. Genomics 113, 1458-1468. 1016/j.ygeno.2021.03.020.
5. Rajkumar MS, Jain M. &, Garg R. . (2021) Discovery of DNA polymorphisms via whole genome resequencing and their functional relevance in salinity stress response in chickpea. Physiologia Plantarum 173, 1573-1586. doi: 10.1111/ppl.13507. †Joint corresponding author
6. Singh V, Jain M. (2021) Recent advancements in CRISPR-Cas toolbox for imaging applications. Critical Reviews in Biotechnology doi: 10.1080/07388551.2021.1950608.
7. Jain M, Garg R. (2021) Enhancers as potential targets for engineering abiotic stress tolerance in crop plants. Physiologia Plantarum 173, 1382-1391. doi: 10.1111/ppl.13421.
8. Chennakesavulu K, Singh H, Trivedi P, Jain M, Yadav SR. (2021) State-of-the-art in CRISPR technology and engineering drought, salinity, and thermo-tolerant crop plants. Plant Cell Reports doi: 10.1007/s00299-021-02681-w.
9. Synthetic Tunability and Biophysical Basis for Fabricating Highly Fluorescent and Stable DNA Copper Nanoclusters Neha Tiwari, Rakesh Kumar Mishra, Sakshi Gupta, Rakesh Srivastava, Soumya Aggarwal ,Pradipta Bandyopadhyay, and Manoj Munde Langmuir 2021, 37, 31, 9385–9395
10. Yadav, A. K.; Bandyopadhyay, P.; Urbic, T.; Dill, K. A. Analytical 2-Dimensional Model of Nonpolar and Ionic Solvation in Water. J. Phys. Chem. B 2021, 125 (7), 1861–1873. https://doi.org/10.1021/acs.jpcb.0c10329.
11. ABC-finder: A containerized web server for the identification and topology prediction of ABC proteins P Vishwakarma, NK Meena, R Prasad, AM Lynn… - Biochimica et Biophysica Acta (BBA)-Biomembranes, 2021
12. Deletion of the non-essential Rpb9 subunit of RNA polymerase II results in pleiotropic phenotypes in Schizosaccharomyces pombe V Bhardwaj, P Vishwakarma, A Lynn, N Sharma - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2021.
13. ICMR’s antimicrobial resistance surveillance system (i-AMRSS): A promising tool for global antimicrobial resistance surveillance Jasmine Kaur, Ajay Singh Dhama, Harish Buttolia, Jasleen Kaur, Kamini Walia, Vinod Ohri, Vinit Kumar, Andrew M Lynn, Alok Srivastava, Harpreet Singh- JAC-antimicrobial resistance, 2021
14. Identifying the natural polyphenol catechin as a multi-targeted agent against SARS-CoV-2 for the plausible therapy of COVID-19: An integrated computational approach, Chandra Bhushan Mishra, Preeti Pandey, Ravi Datta Sharma, Md Zubbair Malik, Raj Kumar Mongre, Andrew M Lynn, Rajendra Prasad, Raok Jeon, Amresh Prakash, Briefings in Bioinformatics, 2021.
15. Structural heterogeneity in RNA recognition motif 2 (RRM2) of TAR DNA-binding protein 43 (TDP-43): clue to amyotrophic lateral sclerosis, A Prakash, V Kumar, A Banerjee, AM Lynn, R Prasad - Journal of Biomolecular Structure and Dynamics, 2021.
16. Artificial Intelligence in Skin Cancer: Diagnosis and Therapy, T Das, V Kumar, A Prakash, AM Lynn - Skin Cancer: Pathogenesis and Diagnosis, 2021
17. Deciphering the Role of Epigenetic Reprogramming in Host-Pathogen Interactions, AK Kang, AM Lynn, U Dhawan - Integrated Omics Approaches to Infectious Diseases, 2021
18. Virtual Screening: Practical Application of Docking, Consensus Scoring and Rescoring Using Binding Free Energy, Sunita Gupta, Mohd Waseem, Naveen Kumar Meena, Roopa Kuntal, Andrew M Lynn, Smriti Mishra, Innovations and Implementations of Computer Aided Drug Discovery Strategies in Rational Drug Design, 2021
19. Standardizing a Protocol for Studying pH-dependent Transient Conformations using Computer Simulations, R Singh, AM Lynn - bioRxiv, 2021
20. Virtual screening and free energy estimation for identifying Mycobacterium tuberculosis flavoenzyme DprE1 inhibitors, N Kumar, R Srivastava, A Prakash, AM Lynn - Journal of Molecular Graphics and Modelling, 2021
21. Subbarao Naidu, Madhulata Kumari and Ruhar Singh, Exploring the Interaction Mechanism Between potential Inhibitor and Multi-Target Mur Enzymes of Mycobacterium Tuberculosis using Molecular Docking, Molecular Dynamics Simulation, Principal Component Analysis, Free Energy Landscape, Dynamic Cross-Correlation matrices, vector movements, and binding free energy calculation,Journal of Molecular structure and dynamics(2021)Oct 18;1-30
22. Subbarao Naidu and Jyoti Verma, Insilico study on the effect of SARS-CoV-2 RBD hotspot mutants’ interaction with ACE2 to understand the binding affinity and stability,Virology(2021) Sep;561:107-116
23. Subbarao Naidu and Madhulata Kumari, Deep learning model for virtual screening of novel 3C-like protease enzyme inhibitors against SARS Coronavirus diseases Computers in Biology and Medicine(2021) May;132:104317.
24. Subbarao Naidu, Mohd Sajid Ali, Mohd Waseem and Hamad A. Al-Lohedan, Noncovalent molecular interactions between antineoplastic drug gemcitabine and a carrier protein identified through spectroscopic and in silico methods, International journal of Biological macromolecules(2021) Volume 182, 1 Pages 993-1002
25. Jyori Verma and Naidu Subbarao, A comparative study of human Betacoronaviruses spike proteins: Structure, function and therapeutics, Archives of Virology(2021)166, p 697–714
26. Danishuddin,Naidu Subbarao,Sultan Alouffi and Shahper Khan Mohd Khan, From Design to Development: Paving the way for novel epigenetic modulators, Current Drug Targets, Feb 2021, DOI: 10.2174/1389450122666210215111744
27. Molecular Characterization of HOXA2 and HOXA3 Binding Properties, Joshua Mallen, Manisha Kalsan, Peyman Zarrineh, Laure Bridoux, Shandar Ahmad, Nicoletta Bobola*, Journal of Developmental Biology 9 (2021) 4, 55
28. MycoVarP: Mycobacterium Variant and Drug Resistance Prediction Pipeline for whole-genome sequence data analysis, Sandeep Swargam, Indu Kumari, Amit Kumar, Dibyabhaba Pradhan, Anwar Alam, Harpreet Singh, Anuja Jain, Kangjam Rekha Devi, Vishal Trivedi, Jogesh Sarma, Mahmud Hanif, Kanwar Narain, Nasreen Zafar Ehtesham, Seyed Ehtesham Hasnain*, Shandar Ahmad*, Frontiers in Bioinformatics (2021) 78
29. Deciphering the Role of Residues Involved in Disorder-To-Order Transition Regions in Archaeal tRNA Methyltransferase-5, Ambuj Srivastava, Dhanusha Yesudhas, Shandar Ahmad, Michael Gromiha*, Genes 12(3) (2021) 399
30. Understanding disorder-to-order transitions in protein–RNA complexes using molecular dynamics simulations, Ambuj Srivastava, Dhanusha Yesudhas, Shandar Ahmad, Michael Gromiha*, Journal of Biomolecular Structure and Dynamics (2021) 1-11
31. Current Applications of Artificial Intelligence in Cleft Care: A Scoping Review, Harnoor Dhillon, Prabhat Kumar Chaudhari*, Kunaal Dhingra, Rong-Fu Kuo, Ramandeep Kaur Sokhi, Mohammad Khursheed Alam, Shandar Ahmad, Frontiers in Medicine (2021) 8
32. Current insights and advancements in head and neck cancer: emerging biomarkers and therapeutics with cues from single cell and 3D model omics profiling, Vibha Tandon*, Yashika Jawa, Pooja Yadav, Shruti Gupta, Sivapar V Mathan, Jyoti Pandey, Ajay Kumar Saxena, Suneel Kateriya, Ashu B Tiku, Neelima Mondal, Jaydeep Bhattacharya, Shandar Ahmad, Rupesh Chaturvedi, Rakesh K Tyagi, Rana P Singh, Frontiers in Oncology (2021) 3061
33. Feature Selection for Topological Proximity Prediction of Single-Cell Transcriptomic Profiles in Drosophila Embryo Using Genetic Algorithm, Shruti Gupta, AK Verma, Shandar Ahmad* , Genes (2021) 12(1), 28
34. Shah Sapna Ratan, Clinical influence of hydroxychloroquine with azithromycin on blood flow through blood vessels for the prevention and Treatment of covid-19, International journal of biology, pharmacy and allied science. July, 2021, 10(7): 2195-2204.
35. Shah Sapna Ratan, Purnima Chaturvedi, Rohit Kumar, “Bio-Mechanical and Bio-Rheological Aspects of Sickle Red Cells in Microcirculation: A Mathematical Modelling Approach, Fluids, September, 2021, 6, 322, pp. 01-15.
36. Sharma R, Lovell et al,. (2021) Polyploidy and genomic introgressions facilitate climate adaptation and biomass yield in switchgrass. Nature 590, 438-444.
37. Dhaka N and Sharma R. (2021) MicroRNA-mediated regulation of agronomically important seed traits: a treasure trove with shades of grey! Critical Reviews in Biotechnology, 1-15.
38. Agarwal R, Namrata D, Sharma R and Aman J. (2021) Genome-wide evolutionary analysis of precursor sequences of MIR156 and MIR172 family members in Brassica species Research Journal of Biotechnology, 16 (4), 81-92.
39. Amit Jangid, Md. Zubbair Malik, Ram Ramaswamy, R. K. Brojen Singh, Transition and Identification of Pathological States in p53 Dynamics for Therapeutic Intervention. Scientific Reports 11, 2349 (2021) (Corresponding author)
40. Athokpam, Langlen Chanu, Jyoti Bhadana, and RK Brojen Singh. Non-Markovian process with variable memory functions. Ricerche di Matematica. 1-17, (2021) https://doi.org/10.1007/s11587-021-00586-0 (Corresponding author).
41. Shakti Nath Singh, Athokpam, Langlen Chanu , Md. Zubbair Malik and R. K. Brojen Singh. Interplay of cellular states: Role of delay as control mechanism. Physica A: Statistical Mechanics and its Applications. 572, 125869, (2021). (Corresponding author).
42. Irengbam Rocky Mangangcha, R.K. Brojen Singh, Ömer Küçük, Shakir Ali. Xanthone glucoside 2-β-D-glucopyranosyl-1, 3, 6, 7-tetrahydroxy-9H-xanthen-9-one binds to the ATP-binding pocket of glycogen synthase kinase 3β and inhibits its activity: implications in prostate cancer and associated cardiovascular disease risk. Journal of Biomolecular Structure and Dynamics. 1-17, (2021).
43. RK Sanayaima Singh, Md. Zubbair Malik and R. K. Brojen Singh. Diversity of SARS-CoV-2 isolates driven by pressure and health index. Epidemiology & Infection. 149, e38 (2021). (Corresponding author).
44. Jyoti Bhadana, Athokpam, Langlen Chanu, Md. Zubbair Malik and RK Brojen Singh Noise and delay can shape distribution functions in stochastic reaction dynamics. Nonlinear Dynamics. 105, 797 (2021) (Corresponding author).
45. Wahid M, Arshad J, Mandal R, Aldailah H, Janahi EM Dhama K, Somvanshi P, Haque S (2021) Variants of SARS-CoV-2, their effects on infection, transmission and neutralization by vaccine induced antibodies. European Review for Medical and Pharmacological Sciences. 25: 5867-586
46. Sirohi PR, Kumari A, Admane N, Somvanshi P, Grover A  The polyphenolic phytoalexin polydatin inhibits amyloid aggregation of recombinant human prion protein RSC Advances Vol 11 25901.DOI: 10.1039/d1ra01891d
47. Sundaram MK, Almutary AG, Alsulimani A,Ahmad R, Somvanshi P, Bhardwaj T, Pellicano R, Fagoonee S, Hussain A, Haque S (2021) Antineoplastic action of sulforaphane on HeLa cells by modulation of signaling pathways and epigenetic pathways. Minerva Medica 23736/S0026-4806.21.07656-4 
48.  Rukshar Afreen, Shivani Tyagi, Gajendra Pratap Singh, Mamtesh Singh, Challenges and Perspectives of Polyhydroxyalkanoate Production From Microalgae/Cyanobacteria and Bacteria as Microbial Factories: An Assessment of Hybrid Biological System, Frontiers in Bioengineering and Biotechnology,9,109, February, 2021, https://doi.org/10.3389/fbioe.2021.624885.
49. Madhuri Jha, Mamtesh Singh, Gajendra Pratap Singh, Modeling of Second-Line Drug behavior in Tuberculosis using Petri net, International Journal of System Assurance Engineering and Management, November 2021, https://doi.org/10.1007/s13198-021-01320-7
50. Ghanshyam Singh, Binod K. Kanaujia, Vijay Kumar Pandey, Deepak Gangwar and Sachin Kumar, “Quad-Band multi-polarized antenna with modified electric-inductive− capacitive resonator,” International Journal of Microwave and Wireless TechnologiesCambridge University Press, (UK)vol. , pp. , 2021. DOI: https://doi.org/10.1017/S1759078721000106
51. Ghanshyam Singh, Binod K. Kanaujia, Vijay Kumar Pandey, Deepak Gangwar and Sachin Kumar, “Hexa-band pattern reconfigurable antenna with defected ground plane,” International Journal of Electronics(UK)vol. , no. , pp. , 2021.https://doi.org/10.1080/00207217.2020.1870749
52. Rohit Gurjar, Dharmedra Upadhyay and Binod K. Kanaujia, Karishma Sharma, “A Compact U-Shaped UWB-MIMO Antenna with Novel Complementary Modified Minkowski Fractal for Isolation Enhancement,” Progress in Electromegnets Research C, (USA) vol. 107, no. ,pp. 81-96, 2021.
53. Gunjan Mittal, Shantanu Dwari, Binod K. Kanaujia, Sandeep Kumar and Hanjung song, “Active feedback supported CMOS LNA blended with coplanar waveguide‐fed antenna for Wi‐Fi networks”IET Microwaves Antennas and Propogation, (UK) vol.15, no. 06, pp. 537-546, 2021.
54. Maksud Alam, Amber Khan, Maiuddin, Binod. K. Kanaujia, , Mirza Beg, Sachin “Highly efficient artificial magnetic conductor enabled CPW fed compact antenna for BAN wearable applications,”Frequenz(Germany) vol. 75, no. 3, pp. 101-108, 2021.
55. Rohit Gurjar, Dharmedra Upadhyay and Binod Kr. Kanaujia, Karishma Sharma, “A Compact U-Shaped UWB-MIMO Antenna with Novel Complementary Modified Minkowski Fractal for Isolation Enhancement,” Progress in Electromegnets Research C, (USA) vol. 107, no. ,pp. 81-96, 2021.
56. Vikrant Kaim, Binod Kr Kanujia, and K. Rambabu, “Quadrilateral Spatial Diversity Circularly Polarized MIMO Cubic Implantable Antenna System for Biotelemetry,”IEEE Transaction on Antennas and Propagation(USA), vol. 69 , no.03, pp. 1260-1272, 2021.
57.  “Network geometry and market instability,” A. Samal, H.K. Pharasi, S.J. Ramaia, H. Kannan, E. Saucan, J. Jost, and A. Chakraborti, Royal Society Open Science 8, 201734 (2021). 
58.  “Enhanced photocatalytic activity of plasmonic Au nanoparticles incorporated MoS2 nanosheets for degradation of organic dyes,” A. Rani, A.S. Patel, A. Chakraborti, K. Singh, and P. Sharma, Journal of Materials Science: Materials in Electronics 32, 6168 (2021).
59.  “Network-centric indicators for fragility in global financial indices,” A. Samal, S. Kumar, Y. Yadav, and A. Chakraborti, Frontiers in Physics 8, 624373 (2021)
60.  “Distress propagation on production networks: Coarse-graining and modularity of linkages,” A. Kumar, A.S. Chakrabarti, A. Chakraborti, and T. Nandi, Physica A: Statistical Mechanics and its Applications 568, 125714 (2021). 
61.  “Phase separation and scaling in correlation structures of financial markets,” A. Chakraborti, Hrishidev, K. Sharma, and H.K. Pharasi, J. Phys. Complex. 2, 015002 (2021). 
62. Kinetic origin of nucleosome invasion by pioneer transcription factors Anupam Mondal, Sujeet Kumar Mishra & Arnab Bhattacherjee*. Biophysical Journal, 120(23):5219-5230, 2021

 

 Journals/Research Articles

1. Srivastava, Ambuj; Yesudhas, Dhanusha; Ramakrishnan, Chandrasekaran; Ahmad, Shandar; Gromiha, M Michael; Role of disordered regions in transferring tyrosine to its cognate tRNA   International Journal of Biological Macromolecules, 150, 705-713,(2020)
2. Ahmad, Shandar; Potential of age distribution profiles for the prediction of COVID-19 infection origin in a patient group Informatics in Medicine Unlocked, 20, 100364 (2020)
3. Ahmad, Shandar; Ballester, Pedro; Fernandez, Michael Llamosa; Intelligent Systems for Genome Functional Annotations    Frontiers in Genetics, 11, 915 (2020)
4. Krishna, M; Gupta, S; Delgado–Baquerizo, M; Morriën, E; Garkoti, SC; Chaturvedi, R; Ahmad, Shandar; Successional trajectory in soil bacterial communities are shaped by plant-driven changes in soilduring secondary succession, Scientific Reports, 10, 9864 (2020)
5. Appiah, M.G.; Park, E.J.; Darkwah, S.; Kawamoto, E.; Akama, Y.; Gaowa, A.; Kalsan, M.; Ahmad, Shandar.; Shimaoka, M.; Intestinal Epithelium-Derived Luminally Released Extracellular Vesicles in Sepsis Exhibit the Ability to Suppress TNF-a and IL-17A Expression in Mucosal Inflammation,  Int. J. Mol. Sci. 21, 22, 8445 (2020)
6. Gupta, Shruti; Verma, Ajay Kumar; Ahmad, Shandar; Feature Selection for Topological Proximity Prediction of Single-Cell Transcriptomic Profiles in Drosophila Embryo Using Genetic Algorithm, Genes    12        1            28        2020
7. Srivastava, Ambuj; Yesudhas, Dhanusha; Ahmad, Shandar; Gromiha, M Michael; Deciphering the Role of Residues Involved in Disorder-To-Order Transition Regions in Archaeal tRNA Methyltransferase 5, Genes 12, 3, 399 (2021)
    
8. Anupam Mondal and Arnab Bhattacherjee*. Mechanism of Dynamic Binding of Replication Protein A to ssDNA, Journal of Chemical Information and Modelling. 60, 5057-5069, 2020.
9. Abhibhav Sharma, Saurabh Kumar Sharma, Yufang Shi, Gerry Melino, Arnab Bhattacherjee* and Gobardhan Das. BCG Vaccination Policy and Preventive Chloroquine Usage: Do They Have an Impact on COVID-19 Pandemic?, Nature Cell Death and Disease. 11, 516, 2020.
10. Ravi Jain, Pinki Dey, Sakshi Gupta, Soumya Pati, Arnab Bhattacherjee, Manoj Munde, and Shailja Singh. Molecular Dynamics Simulations and Biochemical Characterization of Pf14-3-3 and PfCDPK1 Interaction Towards its Role in Growth of Human Malaria Parasite. Biochemical Journal, 477(12):2153-2177, 2020.
11. Pinki Dey and Arnab Bhattacherjee*. Structural Basis of Enhanced Facilitated Diffusion of DNA Binding Proteins in Crowded Cellular Milieu.  Biophysical Journal. 118(2):505-517, 2020
12.  “Network geometry and market instability,” A. Samal, H.K. Pharasi, S.J. Ramaia, H. Kannan, E. Saucan, J. Jost, and A. Chakraborti, Royal Society Open Science 8, 201734 (2021). 
13.  “Enhanced photocatalytic activity of plasmonic Au nanoparticles incorporated MoS2 nanosheets for degradation of organic dyes,” A. Rani, A.S. Patel, A. Chakraborti, K. Singh, and P. Sharma, Journal of Materials Science: Materials in Electronics 32, 6168 (2021).
14.  “Network-centric indicators for fragility in global financial indices,” A. Samal, S. Kumar, Y. Yadav, and A. Chakraborti, Frontiers in Physics 8, 624373 (2021)
15.  “Distress propagation on production networks: Coarse-graining and modularity of linkages,” A. Kumar, A.S. Chakrabarti, A. Chakraborti, and T. Nandi, Physica A: Statistical Mechanics and its Applications 568, 125714 (2021). 
16.  “Phase separation and scaling in correlation structures of financial markets,” A. Chakraborti, Hrishidev, K. Sharma, and H.K. Pharasi, J. Phys. Complex. 2, 015002 (2021). 
17. Emerging spectra characterization of catastrophic instabilities in complex systems,” A. Chakraborti, K. Sharma, H.K. Pharasi, K.S. Bakar, S. Das, and T.H. Seligman, New J. Phys. 22, 063043 (2020). 
18.  “A novel approach for classification of mental tasks using multiview ensemble learning (MEL),” A. Gupta, R.U. Khan, V.K. Singh, M. Tanveer, D. Kumar, A. Chakraborti, and R.B. Pachori, Neurocomputing 417, 558-584 (2020).
19.  “Interaction of fluorescent gold nanoclusters with transition metal dichalcogenides nanosheets: A spectroscopic study,” A.S. Patel, A. Chakraborti, and P. Mishra, Journal of Luminescence 227, 117589 (2020).
20. A look inside the black box: Using graph-theoretical descriptors to interpret a Continuous-Filter Convolutional Neural Network (CF-CNN) trained on the global and local minimum energy structures of neutral water clusters  J. Chem. Phys. 153, 024302 (2020);  Jenna A. Bilbrey, Joseph P. Heindel, Malachi   Schram, Pradipta Bandyopadhyay,  Sotiris S. Xantheas, and Sutanay Choudhury
21. Analytical 2-Dimensional Model of Nonpolar and Ionic Solvation in Water Ajeet Kumar Yadav, Pradipta Bandyopadhyay, Tomaz Urbic, Ken A. Dill J. Phys. Chem. B 2021, 125, 7, 1861–1873
22. Calcium ion binding to calmodulin: binding free energy calculation using the molecular mechanics Poisson-Boltzmann surface area (MM-PBSA) method by incorporating implicit polarization, Journal of Biomolecular Structure and Dynamics, DOI: 10.1080/07391102.2020.1810125 Abdul Basit, Rakesh Kumar Mishra & Pradipta Bandyopadhyay (2020) 
23. Optimising the parameters of the Gibbs Ensemble Monte Carlo simulation of phase separation: the role of multiple relaxation times, Molecular Simulation, 46:8, 616-626, Bina Kumari, Pradipta Bandyopadhyay & Subir K. Sarkar (2020) 
24. Bhattacharjee A, Srivastava P, Nath O, Jain M., Genome-wide discovery of OsHOX24-binding sites and regulation of desiccation stress response in rice. Plant Mol Biol 2021, 105, 205-214.
25. Khemka NK, Rajkumar MS, Garg R, Jain M., Genome-wide profiling of miRNAs during seed development reveals their functional relevance in seed size/weight determination in chickpea. Plant Direct 2021, 5:e00299. (Article of the week)
    Bhaskar A, Paul LK, Sharma E, Jha S, Jain M, Khurana JP., OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis. Plant Physiol Biochem 2021, 161, 98-112.
26. Rajkumar MS, Gupta K, Khemka N, Garg R, Jain M., DNA methylation reprogramming during seed development and its functional relevance in seed size/weight determination in chickpea. Communications Biol 2020, 3, 340.
27. Bansal J, Gupta K, Rajkumar MS, Garg R, Jain M., Draft genome and transcriptome analyses of wild halophyte rice Oryza coarctata provide resources for salinity and submergence stress response factors. Physiol Plantarum 2020, doi: 10.1111/ppl.13284.
28. Rajkumar MS, Shankar R, Garg R, Jain M., Bisulphite sequencing reveals dynamic DNA methylation under desiccation and salinity stresses in rice cultivars. Genomics 2020,112, 3537-3548.
29. Subudhi P†, Shankar R, Jain M†. (2020) Whole genome sequence analysis of rice genotypes with contrasting response to salinity stress. Sci Rep 2020,10, 21259. †Joint corresponding author
30. Nawkarkar P, Chugh S, Sharma S, Jain M, Kajla S, Kumar S., Characterization of the chloroplast genome facilitated the transformation of Parachlorella Kessleri-I, a potential marine alga for biofuel production. Curr Genomics 2020, doi: 10.2174/1389202921999201102164754.
31. Hari Singh, Kunal srivastava, Sachin Kumar and Binod K Kanaujia, “A Planar Dual-Band Antenna for ISM/Wearable Applications,” Wireless Personal Communication Springer vol. 118, No. 01, pp.631-646,  2021.
32. Ghanshyam Singh, Binod K. Kanaujia, Vijay Kumar Pandey, Deepak Gangwar and Sachin Kumar, “Quad-Band multi-polarized antenna with modified electric-inductive− capacitive resonator,” International Journal of Microwave and Wireless Technologies Cambridge University Press, (UK) vol. , pp. , 2021.  DOI: https://doi.org/10.1017/S1759078721000106
33. Ghanshyam Singh, Binod K. Kanaujia, Vijay Kumar Pandey, Deepak Gangwar and Sachin Kumar, “Hexa-band pattern reconfigurable antenna with defected ground plane,” International Journal of Electronics (UK) vol. , no. , pp. , 2021. https://doi.org/10.1080/00207217.2020.1870749
34. Rohit Gurjar, Dharmedra Upadhyay and Binod K. Kanaujia, Karishma Sharma, “A Compact U-Shaped UWB-MIMO Antenna with Novel Complementary Modified Minkowski Fractal for Isolation Enhancement,” Progress in Electromegnets Research C, (USA) vol. 107, no. ,pp. 81-96, 2021.
35. Gunjan Mittal, Shantanu Dwari, Binod K. Kanaujia, Sandeep Kumar and Hanjung song, “Active feedback supported CMOS LNA blended with coplanar waveguide‐fed antenna for Wi‐Fi networks” IET Microwaves Antennas and Propogation, (UK) vol.15, no. 06, pp. 537-546, 2021.
36. Alka Verma, Anil Kumar Singh, Neelam Srivastava, Shilpee Patil & Binod K. Kanaujia(2020) A compact circularly polarized modified printed monopole antenna for wireless applications,” Electromagnetic, Taylor and Francis (UK) vol.40, no.08, pp.576-593,  August, 2020.
37. Maksud Alam, Amber Khan, Maiuddin, Binod. K. Kanaujia, , Mirza Beg, Sachin “Highly efficient artificial magnetic conductor enabled CPW fed compact antenna for BAN wearable applications,” Frequenz  (Germany) vol. 75, no. 3, pp. 101-108,  2021.
    Amit Birwal, Sanjeev Singh, Binod K. Kanaujia and Sachin Kumar, “A novel design of ultra-wide stop- band single-layer frequency selective surface using square-loop and cross,” International Journal of Microwave and Wireless Technologies Cambridge University Press, (UK) vol. , No. , pp. -, 2020. https://doi.org/10.1017/S1759078720001464
38. Rakesh Nath Tiwari, Prabhakar Singh and Binod K. Kanaujia, “A Coalesced Kite Shaped Monopole Antenna for UWB Technology,” Wireless Personal Communication Springer vol. 114, pp. 3031-3048,  2020.
39. Hari Singh, Binod K Kanaujia, Kunal srivastava, and Sachin Kumar “Wideband textile multiple‐input‐multiple‐output antenna for industrial, scientific and medical (ISM)/wearable applications,” International Journal of RF and Microwave Computer-Aided Engineering, (USA)vol. , no. , pp. e22451, 2020.
40. M. K. Verma, Binod K. Kanaujia, J. P. Saini, , “A Compact Multi Slots Loaded Gap Couped CP Antennwith DGS for WLAN/WiMAX Applications,” International Journal of RF and Microwave Computer-Aided Engineering, (USA)vol. , no. , pp.  e22431, 2020.
41. Umesh Singh, Sudip Biswas, Keshav Singh Binod Kr Kanujia, and Chih-Peng Li “Beamforming Design for In-Band Full-Duplex Multi-Cell Multi-User MIMO LSA Cellular Networks,” IEEE Access, (USA)vol. 08, pp. 222355-222370, 2020.
42. Rohit Gurjar, Dharmedra Upadhyay and Binod Kr. Kanaujia, Karishma Sharma, “A Compact U-Shaped UWB-MIMO Antenna with Novel Complementary Modified Minkowski Fractal for Isolation Enhancement,” Progress in Electromegnets Research C, (USA) vol. 107, no. ,pp. 81-96, 2021.
43. Vikrant Kaim, Binod Kr Kanujia, and K. Rambabu, “Quadrilateral Spatial Diversity Circularly Polarized MIMO Cubic Implantable Antenna System for Biotelemetry,” IEEE Transaction on Antennas and Propagation (USA), vol. 69 , no.03, pp. 1260-1272, 2021.
44. M. K. Verma, Binod K. Kanaujia, J. P. Saini, , “A Compact Multi Slots Loaded Gap Couped CP Antennwith DGS for WLAN/WiMAX Applications,” International Journal of RF and Microwave Computer-Aided Engineering, (USA) vol. 30, no. 12, pp. e22431, 2020.
45. Kunal Srivastava, Sachin Kumar, Santanu Dwari, Binod Kr Kanujia, and Hyun Chul Choi & Kang Wook Kim  “Anisotropic Meta-surface-based Wideband High Gain Circularly Polarized Patch Antenna,” Electromagnetic, Taylor and Francis (UK) vol.40, no.08, pp.594-604,  August, 2020.
46. Yatendra Kumar, Ravi kumar Gangwar, and Binod Kr Kanujia, “Characterization of CP radiations in a Planar Monopole Antenna using Tuning Fork Fractal Slot for LTE Band13 / Wi-Max and Wi-Fi Applications,” IEEE Access, (USA) vol. , no. , pp.  127123-127133 , 2020.
47. Sonal Gupta, Shilpee Patil, Chhaya dalela and Binod K. Kanaujia, “Analysis and desigof inclined fractal defected ground based circularly polarized antenna for CA-band applications,” International Journal of Microwave and Wireless Technologies Cambridge University Press, (UK) vol. 40, No. 07, pp. 526-542, 2020.
48. Prasant Chaudary, Ashwani Kumar, Pramod kumar Binod Kr Kanujia and Amit Birwal, “Design of a New Metasurface and its Application for Linear to Circular Polarization Conversion,” International Journal of Electronics (UK) vol. 108, no. 03, pp. 411-425, 2020.   
49. Sumer Singh, Binod k kanaujia, Ajeet Singh, Jugul kishor and M Ladislao, “Dual-Band Circularly Polarized MIMO DRA for Sub-6 GHz Applications,” International Journal of RF and Microwave Computer-Aided Engineering, (USA) vol. 30, no. 10, pp. e22350, 2020.
50. Kunal Srivastava, Sachin Kumar, Binod Kr Kanujia, and Santanu Dwari, “Design and packaging of ultra‐wideband multiple‐input‐multiple‐output/diversity antenna for wireless applications,” International Journal of RF and Microwave Computer-Aided Engineering, (USA) vol. 30, no. 10, pp. e22357, 2020.
51. Gunjan Mittal, Binod K. Kanaujia, Shantanu Dwari, Sandeep Kumar and Hanjung song, “Performance of An Ultra Wide Band DCBLNA with Suspended Strip line Radiator for Human Breast Cancer Diagnosis Medical Imaging application,” IET Circuits, Devices & Systems, (UK) vol. 14, no. 08, pp. 1228-1234, , 2020.
52. Geetanjali Rathee, Naveen Jaglan, and Binod K. Kanaujia, “An Attack Resilient Framework in Cognitive Radio Network Environment for Inter‑domain and Intra‑domain Communication,” Wireless Personal Communication Springer vol. 114, No. 75, pp. 3457–3475,  June 2020.   
53. Ankit Sharma, Santanu Dwari, Binod. K. Kanaujia, Deepak Gangwar, Sachin Kumar, Satya Prakash and  Lay-Ekuakille, “In-band RCS Reduction and Isolation Enhancement of a 24 GHz Radar Antenna using Metamaterial Absorber for Sensing and Automotive Radar Applications”, IEEE Sensor Journal, , (USA) vol. 20, no. 21, pp. 13086-13096, June, 2020.  
54. A. M. Zaidi, M. T. Beg, Binod Kr Kanujia, Moinddin and K. Rambabu, “A Compact Dual Band Out of Phase Power Divider Having Microstrip Compatibility,” IEEE Transactions on Circuits ann Systems II, (USA) vol. 67, no. 12, pp. 2998-3002, 2020.
55. Vikrant Kaim, Binod Kr Kanujia, Sachin Kumar, Hyun Chul Choi, Kang Wook Kim and K. Rambabu, “Ultra-Miniature circularly polarized cpW-fed implantable Antenna Design and its Validation for Biotelemetry Applications,” Scientific Report Nature, (USA) vol. 10, no. 01, pp. 6795, 2020.
56. Dinesh Kumar Singh, Binod K. Kanaujia, Shantanu Dwari and Ganga Prasad Pandey, “Modelling of Dual Circularly Polarized Capacitive Coupled Slit Loaded Truncated Microstrip Antenna,” Journal of Computational Electronics Springer vol. 19, No. 04, pp. 1564-1572,  2020.
57. Rakesh Nath Tiwari, Prabhakar Singh and Binod k kanaujia, “A Coalesced Kite Shaped Monopole Antenna for UWB Technology,” Wireless Personal Communication Springer vol. 114, No. 102, pp. 3031–3048 ,  2020.
58. A. M. Zaidi, M. T. Beg, Binod Kr Kanujia, Jugul Kishor and K. Rambabu, “A Novel Dual Band Branch Line Coupler and its Application to Design a Dual Band 4× 4 Butler Matrix,” IEEE Access, (USA) vol. 08, pp. 65104-65115, 2020.
59. Shailesh Mishra, Sushrut Das, Shyam Sunder Pattnaik, Sachin Kumar and  Binod K. Kanaujia, “Three-Dimensional Dual-Band Dielectric Resonator Antenna for Wireless Communication,” IEEE Access, (USA) vol. 08, pp. 71593-71604, 2020.
    Amit Birwal, Sanjeev Singh, Binod K. Kanaujia and Sachin Kumar, “Low-profile 2.4/5.8 GHz MIMO/diversity antenna for WLAN applications,” Journal of Electromagnetic Waves and Applications Taylor and Francis vol. 34, no. 9, pp. 1283-1299,  2020.
60. Alka Verma, Neelam Srivastava, Binod K. Kanaujia, Anil kumar Singh and Shilpee Patil, “Hexagonal Ring Electromagnetic Band Gap based Slot Antenna for Circular Polarization and Performance Enhancement,” Microwave and Optical Technology Letters, (USA) vol. 62, no. 07, pp. 2576-2587, 2020.
61. Shailesh Misra, Sushrut Das, Shyam Sunder Pattnaik, Sachin Kumar and  Binod. K. Kanaujia, “A Dual Band Circularly Polarized Elliptical patch Antenna for L1, L2 and L5 Band GPS Application,” Microwave and Optical Technology Letters, (USA) vol. 62, no. 02, pp. 806-815, 2020.
62. Maksud Alam, Maiuddin, Binod. K. Kanaujia, , Mirza Beg, Sachin Kumar  and R Rambabu, “A Compact Circularly Polarized Meta-Resonator Enabled Deca-Band Antenna,” Microwave and Optical Technology Letters, (USA) vol. 62, no. 02, pp. 826-836, 2020. 
63. Alka Verma, Neelam Srivastava, Binod K. Kanaujia and Anil kumar Singh, “Circularly Polarized Microstrip Antenna using SLPD Electromagnetic Band Gap Structure,” Frequenz  (Germany) vol. 74, no. 1-2, pp. 41-51,  2020.
64. Jyori Verma and Naidu Subbarao, A comparative study of human Betacoronaviruses spike  proteins: Structure, function and therapeutics, Archives of Virology(2021)166, p 697–714
65. Danishuddin,Naidu Subbarao,Sultan Alouffi and Shahper Khan Mohd Khan, From Design to Development: Paving the way for novel epigenetic modulators,  Current Drug Targets,  Feb 2021, DOI: 10.2174/1389450122666210215111744
66. Geet Madhukar and Naidu Subbarao, In-silico prediction of potential inhibitors against Phosphatidylinositol 3-Kinase Catalytic Subunit Alpha involved in Head and Neck Squamous Cell Carcinomas.Journal of Biomolecular Structure and Dynamics(2020) DOI: 10.1080/07391102.2020.1861980
67. Geet Madhukar and Naidu Subbarao, Current and Future Therapeutic Targets: A Review on Treating Head and Neck Squamous Cell Carcinoma, accepted in Current cancer Drug Targets, Dec 2020, DOI: 10.2174/1568009620666201229120332
68.  S K Singh and Rajesh Kumar Soma Marla, Pallavi Mishra, Mohar Singh, Ranjeet Maurya, D P Wankhade, Anil Kumar, Mahesh C Yadav, Naidu Subbarao, Refinement of Draft Genome Assemblies of Pigeonpea (Cajanus cajan), Journal: Frontiers in Genetics, section Computational Genomics(2020)  doi: 10.3389/fgene.2020.607432
69. Jyoti Verma, Naidu Subbarao & Maitreyi S. Rajala (2020) Envelope proteins as antiviral drug target, Journal of Drug Targeting, 28 (10), 1046-1052 DOI: 10.1080/1061186X.2020.1792916
70. Jyoti Verma & Naidu Subbarao Designing novel inhibitors against cyclopropane mycolic acid synthase 3 (PcaA): targeting dormant state of Mycobacterium tuberculosis, Journal of Biomolecular Structure and Dynamics(2020), DOI: 10.1080/07391102.2020.1797534
71. Naidu Subbarao & Sharmistha Dey Amrendra Pratap Singh, Lokesh Nigam, Yudhishthir Yadav, Shashank Shekhar, Design and in vitro analysis of SIRT2 inhibitor targeting Parkinson’s disease, Molecular Diversity(2020) https://doi.org/10.1007/s11030-020-10116-z
72. Sakshi Gupta, Neha Tiwari, Jyoti Verma, Mohd Waseem, Naidu Subbarao, Manoj MundeEstimation of Stronger Heparin Binding Locus in Fibronectin Domain III14 using Thermodynamic and Molecular Dynamic Study., RSC Advances(2020),10, 20288-20301
73. Chetna Kumari, Muhammad Abulaish, Naidu Subbarao, Using SMOTE to Deal with Class-Imbalance Problem in Bioactivity Data to Predict mTOR Inhibitors, SN Computer Science(2020 1:150 https://doi.org/10.1007/s42979-020-00156-5
74. Rukshar Afreen, Shivani Tyagi, Gajendra Pratap Singh, Mamtesh Singh, Challenges and Perspectives of Polyhydroxyalkanoate Production From Microalgae/Cyanobacteria and Bacteria as Microbial Factories: An Assessment of Hybrid Biological System, Frontiers in Bioengineering and Biotechnology, 9, 109, https://www.frontiersin.org/articles/10.3389/fbioe.2021.624885/full (IF3.644, SCIE).
75. Gajendra Pratap Singh, Aparajita Borah, Sangram Ray, A review paper on Corona Product of Graphs, Advances and Applications in Mathematical Sciences, 19(10), 1047-1054, August (2020). (SCOPUS).
76. Gajendra Pratap Singh, Madhuri Jha, Mamtesh Singh, Naina, Modeling the mechanism pathways of first line drug in Tuberculosis using Petri nets, International Journal of System Assurance Engineering and Management, Springer, 10.1007/s13198-019-00940-4, 11(2), 313-324, 2020.
77. Shah, Sapna Ratan, and Shabab Akbar, (2020) “Mathematical Study for the Outflow of Aqueous Humor and Function in the Eye”, International Journal of Scientific & Engineering Research, Vol. 11, No. 10, pp. 743-750.
78. Shah, Sapna Ratan and Shabab Akbar, (2020) “The Effects of Prostaglandin Analogs on Intraocular Pressure in Human Eye for Open Angle Glaucoma”, International Journal of Innovative Technology and Exploring Engineering, Vol. 10, No.2 , pp.176-180 .
79. Shah, Sapna Ratan and Rohit Kumar, (2020) “Mathematical Modeling of Blood Flow With the Suspension of Nanoparticles Through a Tapered Artery With a Blood Clot” Frontiers in Nanotechnology, Vol. 2. pp 1-5, Article 596475.
80. Sharma R, Lovell et al,. (2021) Polyploidy and genomic introgressions facilitate climate adaptation and biomass yield in switchgrass. Nature 590, 438-444.
81. Dhaka N and Sharma R. (2021) MicroRNA-mediated regulation of agronomically important seed traits: a treasure trove with shades of grey! Critical Reviews in Biotechnology, 1-15.
82. Agarwal R, Namrata D, Sharma R and Aman J. (2021) Genome-wide evolutionary analysis of precursor sequences of MIR156 and MIR172 family members in Brassica species Research Journal of Biotechnology, 16 (4), 81-92.
83. Kandpal M, Vishwakarma KKC, Krishnan KK, Chinnusamy V, Pareek A, Sharma MK and Sharma R. (2020) Gene expression dynamics of rice peduncles at the heading stage. Frontiers in Genetics, 11:584678.
    Vejlupkova Z, Warman C, Sharma R, Scheller HV, Mortimer JC, and Fowler, JE. (2020) No evidence for transient transformation via pollen magnetofection in several monocot species. Nature Plant, 6, 1323-1324.
84. Shao W, Sharma R, Clausen M, Scheller H.V. (2020) Microscale thermophoresis as a powerful tool for screening glycosyltransferases involved in cell wall biosynthesis. Plant Methods 16.
85. Wierbowski SD, Vo TV, Falter-Braun P, Jobe TO, Kruse LH, Wei X, Liang J, Meyer MJ, Akturk N, Rivera-Erick CA, Cordero NA, Paramo MI, Shayhidin EE, Bertolotti M, Tippens ND, Akther K, Sharma R, Katayose Y, Salehi-Ashtiani K, Hao T, Ronald PC, Ecker JR, Schweitzer PA, Kikuchi S, Mizuno H, Hill DE, Vidal M, Moghe GD, McCouch SR, and Yu H. (2020) A massively parallel barcoded sequencing pipeline enables generation of the first single-colony ORFeome and high-quality protein-protein interactome map for rice Proc Natl Acad Sci USA, Vol 117, 21.
86. Chanu, A. L., & R. K. Brojen Singh (2020). Stochastic approach to study control strategies of Covid-19 pandemic in India. Epidemiology and Infection 148, 1–9, 2020. (Corresponding author)
87. Athokpam, Langlen Chanu, Jyoti Bhadana, and RK Brojen Singh. Stochastic fluctuations as a driving force to dissipative non-equilibrium states. Journal of Physics A: Mathematical and Theoretical 53, 425002 (2020). (Corresponding author)
88. Saurav Mandal, R.K. Sanayaima Singh, Saurabh Kumar Sharma, Md. Zubbair Malik, R.K. Brojen Singh. Complexity in SARS-CoV-2 genome data: Price theory of mutant isolates. bioRxiv 2020.05.04.077511.
89. Amit Jangid, Md. Zubbair Malik, Ram Ramaswamy, R. K. Brojen Singh, Transition and Identification of Pathological States in p53 Dynamics for Therapeutic Intervention. Scientific Reports 11, 2349 (2021) (Corresponding author)
90. Irengbam Rocky Mangangcha, Md. Zubbair Malik, Ömer Küçük, Shakir Ali, R.K. Brojen Singh. Kinless hubs are potential target genes in prostate cancer network. Genomics 112, 5227 (2020). (Corresponding author)
91. Shakti Nath Singh, Md. Zubbair Malik and R.K. Brojen Singh.  Molecular crosstalk: Notch can manipulate Hes1 and miR-9 behavior, J Theor Biol. 504, 11404 (2020) (Corresponding author).
92. Saurav Mandal, Shakti Nath Singh, Md. Zubbair Malik and R.K. Brojen Singh. Stochastic method to control Mycobacterium tuberculosis epidemic. Computational Biology and Chemistry, 87, 107250 (2020). (Corresponding author).
93. Shakti Nath Singh, Md. Zubbair Malik and R. K. Brojen Singh. Towards the revival of oscillation from complete cessation in stochastic systems for application in molecular biology. Bioinformation, 16(3), 274 (2020). (Corresponding author).
94. Indrajit Sharma, R. K. Brojen Singh, Jameson Maibam, R. K. Thapa. First-principles phase transitions, elastic properties and electronic structures calculations of cadmium telluride etc, Materials Research Express, 3(1),11, 2020.
95. Athokpam, Langlen Chanu, Jyoti Bhadana, and RK Brojen Singh. Non-Markovian process with variable memory functions. Ricerche di Matematica. 1-17, (2021) https://doi.org/10.1007/s11587-021-00586-0 (Corresponding author).
96. Shakti Nath Singh, Athokpam, Langlen Chanu , Md. Zubbair Malik and R. K. Brojen Singh. Interplay of cellular states: Role of delay as control mechanism. Physica A: Statistical Mechanics and its Applications. 572, 125869, (2021). (Corresponding author).
97. Irengbam Rocky Mangangcha, R.K. Brojen Singh, Ömer Küçük, Shakir Ali. Xanthone glucoside 2-β-D-glucopyranosyl-1, 3, 6, 7-tetrahydroxy-9H-xanthen-9-one binds to the ATP-binding pocket of glycogen synthase kinase 3β and inhibits its activity: implications in prostate cancer and associated cardiovascular disease risk. Journal of Biomolecular Structure and Dynamics. 1-17, (2021).
98. RK Sanayaima Singh, Md. Zubbair Malik and R. K. Brojen Singh. Diversity of SARS-CoV-2 isolates driven by pressure and health index. Epidemiology & Infection. 149, e38 (2021). (Corresponding author).
99. Jyoti Bhadana, Athokpam, Langlen Chanu, Md. Zubbair Malik and RK Brojen Singh Noise and delay can shape distribution functions in stochastic reaction dynamics. Nonlinear Dynamics. 105, 797 (2021) (Corresponding author).

Book Chapters

1. Choudhary, Meenakshi; Arora Kavita, Paranjape, Makarand, “Electrochemical Biosensors for Early detection of Cancer: Chapter 8”, in Biosensors Based Advanced Cancer Diagnostics, Ed. Khan, Raju, Parihar Aprana, Elseviers, Accepted for publication 2021.
2. Shilpee Patil, Binod kumar Kanaujia and Anil kumar Singh, “Basic Theory and Design of Printed Antennas” Printed Antennas: Theory and Design, CRC Press,Pages 01-36, 2020.
3. Rakesh nath Tiwari, Prabhakar Singh and Binod kumar Kanaujia “Compact Printed Antenna Designs: Need for UWB Communications” Printed Antennas: Theory and Design, CRC Press,Pages 165-212, 2020.
4. Ekta Thakur, Naveen Jaglan, Samir Dev Gupta and Binod kumar Kanaujia “Advances in Patch Antenna Design Using EBG Structures” Printed Antennas: Theory and Design, CRC Press,Pages 363-400, 2020.
5. Kanishka Katoch, Naveen Jaglan, Samir Dev Gupta and Binod kumar Kanaujia “Design of Frequency Selective Surface (FSS) Printed Antennas” Printed Antennas: Theory and Design, CRC Press,Pages 401-436, 2020.
6. Amit Birwal, Sanjeev Singh, and Binod kumar Kanaujia “Smart Compact-Folded Microstrip Antenna for GSM, LTE, and WLAN Applications” Smart Systems and IoT: Innovations in Computing, CRC Press,Pages 475-481, vol. 141, 2020.
7. Gajendra Pratap Singh, Madhuri Jha, Modeling the Immune Response of B-Cell Receptor using Petri Net for Tuberculosis, Chapter 18, Advances Computational Techniques for Sustainable Computing, Ed. Megha Rathi, Adwitiya Sinha, A Chapman & Hall Book, CRC Press, ISBN 9780367495220, accepted for publication, 2021.
8. Gajendra Pratap Singh, Madhuri Jha, Mamtesh Singh, Petri net Modeling of Clinical Diagnosis path in Tuberculosis, Advances in Interdisciplinary Research in Engineering and Business Management, Asset Analytics Performance and safety Management, Eds. P.K. Kapur, Gurinder singh, Saurabh Panwar, ISBN 978-981-16-0037-1 (eBook), 2021.
9. Gajendra Pratap Singh, Madhuri Jha, Mamtesh Singh, Applications of Petri net Modeling in Diverse Area, Mathematical Modelling, Computational Intelligence Techniques and Renewable Energy, In: Advances in Intelligent Systems and Computing, Springer Nature, Singapore, 1287, 2020.
10. Gajendra Pratap Singh, Ekta Raphael Anthony, Mamtesh Singh, Naina, A Graph Theoretic Analysis on Functional EEG Network in Igraph R. In: Chapter 42, Decision Analytics Applications in Industry, (Ed. P.K. Kapur, Gurinder Singh, Yury S. Klochkov, Uday Kumar), Springer Book chapter, pp. 541-555, ISBN: 978-981-15-3643-4 (eBook), https://doi.org/10.1007/978-981-15-3643-4 , 2020.

Books:

1. Binod kumar Kanaujia, Surendra Kumar Gupta, Jugul Kishor and Deepak Gangwar “Printed Antennas: Theory and Design” CRC Press, 2020

 

 Journals/Research Articles

1. Chauhan, Sucheta; Vig, Lovekesh; Ahmad, Shandar; ECG anomaly class identification using LSTM and error profile modeling. Computers in biology and medicine,  2019, 109, 14-21
2. Chauhan, Sucheta; Ahmad, Shandar;  Enabling full‐length evolutionary profiles based Deep Convolutional Neural Network for predicting DNA‐binding proteins from sequence. Proteins: Structure, Function, and Bioinformatics, 2019, 88, 15-30
3. Srivastava, Ambuj; Yesudhas, Dhanusha; Ramakrishnan, Chandrasekaran; Ahmad, Shandar; Gromiha, M Michael;  Role of disordered regions in transferring tyrosine to its cognate tRNAInternational Journal of Biological Macromolecules, 2010,  150, 705-713
4. Sucheta Chauhan, Lovekesh Vig, Michele De Filippo De Grazia, Maurizio Corbetta, Shandar Ahmad*, Marco Zorzi*, A comparison of shallow and deep learning methods for predicting cognitive performance of stroke patients from MRI lesion images, Frontiers in Neuroinformatics, 2019, 13:53
5. Dey P, Bhattacherjee A, Mechanism of Facilitated Diffusion of DNA Repair Proteins in Crowded Environment: Case Study with Human Uracil DNA Glycosylase. J. Phys. Chem. B, 2019, 123, 49, 10354–10364.
6. S Haider, K Ponnusamy, RKB Singh, A Chakraborti, RNK Bamezai, Hamiltonian energy as an efficient approach to identify the significant key regulators in biological networks, PLoS One 14(8), e0221463 (2019).
7. Md Zubbair Malik, KeilashChirom, Shahnawaz Ali, Romana Ishrat, and R. K. Brojen Singh. Methodology of predicting key regulators in ovarian cancer network: A network theoretical approach. BMC cancer,19(1), 1129(2019). (Corresponding author).
8. Irengbam Rocky Mangangcha, Md. Zubbair Malik, ÖmerKüçük, Shakir Ali, R.K. Brojen Singh. Identification of key regulators in Prostate cancer from gene expression datasets of patients, Scientific Reports, 9,16420 (2019). (Corresponding author).
9. Kushwah, M., Bhadauria, S., Arora K., Gaur, M. S., Bio synthesis of colloidal AuNPs using thermally assisted pulse sonication method, Material Research Express, 2019, 6: 115068.
10. Kushwah, M., Bhadauria, S., Arora K., Gaur, M. S., Biosynthesis of Novel Ag@Cu Alloy NPs for Enhancement of Methylene Blue Photocatalytic Activity and Antibacterial Activity, (2019) Material Research Express, 2019, 6: 116561.
11. Kushwah, M., Bhadauria, S., Arora, K., Gaur, M.S., Enhanced catalytic activity of chemically synthesized Au/Ag/Cu trimetallic nanoparticles, Material Research Express, 2019, 6: 095013.
12. AvijitRakshit, PradiptaBandyopadhyay, Joseph P. Heindel, and  Sotiris S. Xantheas, Atlas of putative minima and low-lying energy networks of water clusters n = 3–25J. Chem. Phys., 2019, 151; 214307 
13. PradiptaBandyopadhyay, Pinaki Gupta-Bhaya, A comparative evaluation of pair correlation functions for a highly asymmetric electrolyte with mono and divalent counterions from integral equation theory in hypernetted chain (HNC) approximation and Monte Carlo simulation,Chemical Physics Letters, 2019, 732; 136664
14. Neeta Singh, Binod K. Kanaujia, Mirza Beg, Mainuddin, Sachin Kumar, “A triple band circularly polarized rectenna for RF energy harvesting,” Electromagnetic,Taylor and Francis(UK)vol.39, no.07, pp.481-490,  August, 2019.
15. Ghanshyam Singh, Binod. K. Kanaujia, Vijay kumar Pandey, Deepak Gangwar and Sachinkumar, “Design of Compact Dual-Band Patch Antenna Loaded with D-Shaped Complementary Split Ring Resonator” Journal of Electromagnetic Waves and ApplicationsTaylor and Francisvol.33, no. 16, pp.2096-2111,  2019.   
16. Aashishkumar, C. S. Rai, Mukesh Kumar Khandelwal, and Binod. K. Kanaujia, “ Low Envelope Correlation Coefficient, Enhanced Gain, and Suppressed Mutual Coupling in Compact 4-Port MIMO Microstrip Antenna Loaded with Metasurface,”Microsystem TechnologiesSpringervol. 25, No. 12, pp. 4721-4730,  2019.  
17. Rakesh Nath Tiwari, Prabhakar Singh and Binod k kanaujia, “Neutralization Technique Based Two and Four Port High Isolation MIMO Antennas for UWB Communication,” International Journal of Electronics and CommunicationAEUElsevier, (Germany) vol. 110, pp.152828 , 2019.   
18. Sumer Singh, Binod k kanaujia, Ajeet Singh and Jugulkishor, “Circularly Polarized V-shape Dielectric Resonator Antenna,” International Journal of RF and Microwave Computer-Aided Engineering,(USA)vol.29, no.09, pp.21832, 2019.
19. Rakesh Nath Tiwari, Prabhakar Singh and Binod k kanaujia, “A Compact UWB MIMO Antenna with Neutralization Line for WLAN/ISM/Mobile Applications,” International Journal of RF and Microwave Computer-Aided Engineering,(USA)vol.29, no.11, pp.21907, 2019.
20. Kunal Srivastava, Binod K. Kanujia, S Dwari, Sachin Kumar and Taimur Khan, “3D Cuboidal Design MIMO/Diversity Antenna with Band Notched Characteristics, International Journal of Electronics and CommunicationAEUElsevier, (Germany) vol. 108, pp. 141-147, 2019.   
21. Neeta Singh, Binod K. Kanaujia, Mirza Beg, Mainuddin, Sachin Kumar, “Low Profile Multiband Rectenna for Efficient Energy Harvesting at Microwave Frequencies,” International Journal of Electronics(UK)vol.106, no.12, pp.2057-2071, 2019.
22. Dinesh Raheja,Binod K. Kanujia and Sachin Kumar, “Low Profile Four-Port Super-Wideband MIMO Antenna with Triple Band Rejection Characteristics,” International Journal of RF and Microwave Computer-Aided Engineering,(USA)vol.29, no.10, pp. 21756, 2019.
23. Rakesh Nath Tiwari, Prabhakar Singh and Binod k kanaujia, “A Half Cut Design of Low Profile UWB Planar Antenna for DCS/PCS/ WLAN Applications,” International Journal of RF and Microwave Computer-Aided Engineering,(USA)vol.29, no.09, pp.21817, 2019.
24. JugulKishor,Binod K. Kanaujia, ShantanuDwari,and Ashwani Kumar, “Balanced bandpass filter using TE01δ-mode dielectric resonator” Frequenz(Germany) vol. 39, no. 04, pp. 254-261,  2019.
25. Amit Kumar, Abdul Quaiyum Ansari, Binod K. Kanujia and Jugul kishor, “Dual Circular Polarization with Reduced Mutual Coupling among Two Orthogonally Placed CPW-Fed Microstrip Antennas for Broadband Applications,” Wireless Personal CommunicationSpringervol. 107, No.02 , pp. 759-770,  2019.
26. Dinesh Raheja,Binod K. Kanaujia and Sachin Kumar, “Compact Four-Port MIMO Antenna on Slotted-Edge Substrate with Dual-Band Rejection Characteristics,” International Journal of RF and Microwave Computer-Aided Engineering,(USA)vol.29, no.07, pp.21756, 2019.
27. Amit Birwal, Sanjeev Singh, Binod Kumar Kanaujia and Sachin Kumar, “Broadband CPW-Fed Circularly Polarized Antenna for IoT Based Navigation System,” International Journal of Microwave and Wireless TechnologiesCambridge University Press, (UK)vol. 11,No. 5, pp. 835-843, 2019.
28. Singh, R., Meena, N., Das, T., Sharma, R., Prakash, A., & Lynn, A. (2019). Delineating the conformational dynamics of intermediate structures on the unfolding pathway of $\beta$-lactoglobulin in aqueous urea and dimethyl sulfoxide Journal of Biomolecular Structure and Dynamics, 1–10.
29. Agarwal, V., Naskar, P., Agasti, S., Khurana, G., Vishwakarma, P., Lynn, A., Roche, P., & Puri, N. (2019). The cysteine-rich domain of synaptosomal-associated protein of 23 kDa (SNAP-23) regulates its membrane association and regulated exocytosis from mast cells Biochimica et Biophysica Acta (BBA)-Molecular Cell Research, 1866(10), 1618–1633.
30. Kumar, V., Pandey, P., Idrees, D., Prakash, A. and Lynn, A. (2019). Delineating the effect of mutations on the conformational dynamics of N-terminal domain of TDP-43. Biophysical Chemistry, 250, p.106174.
31. Agarwal, V., Naskar, P., Agasti, S., Khurana, G., Vishwakarma, P., Lynn, A., Roche, P. and Puri, N. (2019). The cysteine-rich domain of synaptosomal-associated protein of 23 kDa (SNAP-23) regulates its membrane association and regulated exocytosis from mast cells. Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, 1866(10), pp.1618-1633.
32. Poonam Vishwakarma, Atanu Banerjee, Ritu Pasrija, Rajendra Prasad,  Lynn A.; “The E-helix is a central core in a conserved helical bundle involved in nucleotide binding and transmembrane domain intercalation in the ABC transporter superfamily” International Journal of Biological Macromolecules, (2019), 127 95-106
33. Sharma R, Liang Y, Lee M Y, Pidtala VR, Motimer J C, and Scheller HV., Agrobacterium-mediated transient transformation of sorghum leaves for accelerating functional genomics and genome editing studies. BMC Research Notes., 2020:13: 116.
34. Dhaka N, Sharma S, Vashisht I, Kandpal M, Sharma MK, and Sharma R*. Small RNA profiling from meiotic and post-meiotic anthers reveals prospective miRNA-target modules for engineering male fertility in sorghum. Genomics., 2019: 112 (2): 1598-1610.
35. Chandran AKN, Moon S, Yoo YH, Gho YS, Cao P, Sharma R, Sharma MK, Ronald PC, and Jung KH. A web-based tool for the prediction of rice transcription factor functions. Database, 2019: baz061.
36. Neogy A, Garg T, Kumar A, Dwivedi AK, Singh H, Singh U, Singh Z, Prasad K, Jain M, Yadav SR. (2019) Genome-wide transcript profiling reveals an auxin-responsive transcription factor, OsAP2/ERF-40, promoting rice adventitious root development. Plant Cell Physiology60, 2343-2355. doi: 10.1093/pcp/pcz132.
37. Sharma E, Jain M, Khurana JP. (2019) Differential quantitative regulation of specific gene groups and pathways under drought stress in rice.Genomics 111, 1699-1712.
38. Madhulata Kumari and Naidu Subbarao Virtual screening to identify novel potential inhibitors for Glutamine synthetase of Mycobacterium tuberculosis Journal of Biomolecular Structure and Dynamics(2019)
39. Samima khatun, Amarjeet Kumar, Naidu Subbarao and Riyaz Uddin, Thermodynamics, molecular modeling and denaturation studies on exploring the binding mechanism of tetramethylpyrazine with human serum albumin, The Journal of Chemical Thermodynamics(2019)
40. Priyadarshini .Devesh Raizada; Pragya Kumar; Tanya Singh; Trisha Pruthi; Abhishek Negi; Lokesh Nigam; Naidu Subbarao Exploring the Modulatory effect of Albumin on calcium phosphate crystallization,  Current Science(2019)
41. Danishuddin, Geet Madhukar and Naidu Subbarao Development of predictive models for anti-malarial using machine learning approaches, SAR and QSAR in Environment Research(2019)
42. Guru Prasad Sharma, Amir Azam,  Subbarao Naidu, Shantibhusan Senapati, Sumiran Kumar Gurung,  Archana Bist,  Afreen Inam, lokesh nigam,  Debasish Mohapatra and Neelima Mondal, CID-6033590 inhibits p38MAPK pathway and induces S-phase cell cycle arrest and apoptosis in prostate cancer cells, Toxicology in vitro(2019),60, 420-436
43. Madhulata Kumari, Subhash Chandra, Neeraj Tiwari and Naidu Subbarao, A genetic programming-based approach to identify potential inhibitors of serine protease of Mycobacterium tuberculosis, Future Medicinal Chemistry(2019)
44. Amaj Ahmed, Hasan Khan, Danishuddin, Naidu Subbarao and Hina Younus, Enhancement in the Catalytic Activity of Human Salivary Aldehyde Dehydrogenase by Alliin from Garlic: Implications in Aldehyde Toxicity and Oral Health
    Current Pharmaceutical Biotechnology(2019) 20(6),  pp. 506-516(11)
45. IshitaVirmani, Christo Sasi, EepsitaPriyadarshini, Raj Kumar, Saurabh Kumar Sharma, Gajendra Pratap Singh, Ram BabuPachwarya, R. Paulra, HamedBarabadi, MuthupandianSaravanan, RamovatarMeena, Comparative Anticancer Potential of Biologically and Chemically
46. Synthesized Gold Nanoparticles, Journal of Cluster Science, Published on October 14, 2019, https://doi.org/10.1007/s10876-019-01695-5
47. Gajendra Pratap Singh, Sujit Kumar Singh, Petri Net Recommender System for Generating of Perfect Binary Tree, International Journal of Knowledge and Systems Science, 10(2), 1-12, 2019.
48. Sakshi Gupta, Gajendra Pratap Singh, Sunita Kumawat, Petri Net Recommender System to Model Metabolic Pathway of Polyhydroxyalkanoates, International Journal of Knowledge and Systems Science, 10(2), 42-59, 2019.
49. Gajendra Pratap Singh, Agraj Gupta, A Petri Net Analysis to Study the Effects of Diabetes on Cardiovascular Diseases, IEEE Xplore, ISBN: 978-93-80544-36-6 , 2019.
50. Gajendra Pratap Singh, MadhuriJha, Petri Net Modeling of Calvin-Benson Bassham Cycle in Photosynthesis and Photorespiration, DOI: 10.21203/rs.2.15608/v1 , 2019.

         
Book Chapters

1. H.K. Pharasi, K. Sharma, A. Chakraborti, T.H. Seligman, , “Complex market dynamics in the light of random matrix theory”,in Eds. F. Abergel, B.K. Chakrabarti, A. Chakraborti, N. Deo, K. Sharma. New Perspectives and Challenges in Econophysics and Sociophysics (Springer, Cham, 2019), pp. 13-34.
2. K. Sharma, A.S. Chakrabarti, A. Chakraborti, “Multi-layered network structure: Relationship between financial and macroeconomic dynamics”, in Eds. F. Abergel, B.K. Chakrabarti, A.Chakraborti, N. Deo, K. Sharma.New Perspectives and Challenges in Econophysics and Sociophysics (Springer, Cham, 2019), pp. 117-131.
3. K. Sharma, and A. Chakraborti, “Epilogue”, in Eds. F. Abergel, B.K. Chakrabarti, A. Chakraborti, N. Deo, K. Sharma.New Perspectives and Challenges in Econophysics and Sociophysics (Springer, Cham, 2019), pp. 269-272.
4. Gupta, D. Kumar, A.Chakrabortiand VK Singh, “Distinguishing Two Different Mental States of Human Thought Using Soft Computing Approaches”,Machine Intelligence and Signal Analysis (Springer, Singapore, 2019) pp. 323-333.
5. J.-L. Léonard, M.Patriarca, E.Heinsalu, K. Sharma and A.Chakraborti,“Patterns of Linguistic Diffusion in Space and Time: The Case of Mazatec”, Complexity Applications in Language and Communication Sciences (Springer, Cham, 2019), pp. 139-170.
6. Kavita Arora, “Chapter 10: Recent biosensing applications of Graphene based nanomaterials” (1-52 pp),, Handbook of Graphene: Biosensors and Advanced Sensors Barbara Palys (Editor), Volume 6, Wiley and Scrivener Publishing, ISBN: 978-1-119-46974-2, copyright © 2019 Scrivener Publishing LLC.
7. Gajendra Pratap Singh, MadhuriJha, Mamtesh Singh, Petri net Modeling of Clinical Diagnosis path in Tuberculosis, Springer Book Chapter (accepted), 2019.
8. Gajendra Pratap Singh, Mamtesh Singh, Book Chapter-4, Statistics in Research-II, In: Research Methodology (for undergraduate students), Rastogi Publications, First Edition, pp. 61-91,ISBN-13: 978-81-940631-4-8, 2019
9. Sakshi Gupta, SunitaKumawat, Gajendra Pratap Singh, Fuzzy Petri Net Representation of Fuzzy Production Propositions of a Rule based System. In International conference on ‘Advances in Computing and Data Sciences’.Communications in Computer and Information Science,Springer, Singapore, 1045, pp. 197-210, ISBN: 978-981-13-9938-1, April 2019.

Books:

1. Abergel, B.K. Chakrabarti, A. Chakraborti, N. Deo, K. Sharma, New Perspectives and Challenges in Econophysics and Sociophysics, (Springer, Cham, 2019).
2. Neeta Singh, Sachin Kumar and Binod kumar Kanaujia, “A  New Trend to Power Up Next-Generation Internet of Things (IoT) Devices: ‘Rectenna’Energy Conservation for IoT Devices, Springer Nature,Pages 331-356, 2019
3. Neeta Singh, Sachin Kumar, Binod kumar Kanaujia,Hyun Chul Choi and Kang Wook Kim, “Energy-Efficient System Design for Internet of Things (IoT) Devices Energy Conservation for IoT Devices, Springer Nature,Pages 49-74, 2019

 

 

 Journals/Research Articles

Prof. Anirban Chakraborti

1. ANIRBAN CHAKRABORTI, SUJOY CHAKRAVARTY, THE SAGA OF KPR: THEORETICAL AND EXPERIMENTAL DEVELOPMENTS,SCIENCE AND CULTURE, 2018
2. Arun Singh Patel, Anirban Chakraborti, Interaction of Fluorescent Gold Nanoclusters with Transition Metal Dichalcogenides Nanosheets: A Spectroscopic Study,arXiv preprint arXiv:1811.06910, 2018
3. Arun Singh Patel, Subhavna Juneja, Pawan K Kanaujia, Vikas Maurya, G Vijaya Prakash, Anirban Chakraborti, Jaydeep Bhattacharya Gold nanoflowers as efficient hosts for SERS based sensing and bio-imaging,Volume 16 Pages 329-336, Nano-Structures & Nano-Objects, 2018
4. Anindya S Chakrabarti, Arnab Chatterjee, Tushar Nandi, Asim Ghosh, Anirban Chakraborti, Quantifying invariant features of within-group inequality in consumption across groups,Volume 13 Issue 3 Pages 469-490, Journal of Economic Interaction and Coordination, 2018
5. Hirdesh K Pharasi, Kiran Sharma, Anirban Chakraborti, Thomas H Seligman,Complex market dynamics in the light of random matrix theory,arXiv preprint arXiv:1809.07100, 2018
6. Gunjan Sehgal, Kiran Sharma, Arnab Chatterjee, Anirban Chakraborti, Spatio-Temporal Networks of Social Conflicts: Analysis and Modeling,Pages 740-743,2018 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining (ASONAM), 2018
7. Kiran Sharma, Anindya S Chakrabarti, Anirban Chakraborti, Multi-layered network structure: Relationship between financial and macroeconomic dynamics,arXiv preprint arXiv:1805.06829, 2018
8. Anirban Chakraborti, Syed S Husain, Joseph Whitmeyer, A Model for Innovation Diffusion with Intergroup Suppression,arXiv preprint arXiv:1802.08943, 2018
9. Syed Shariq Husain, Kiran Sharma, Vishwas Kukreti, Anirban Chakraborti, Identifying the global terror hubs and vulnerable motifs using complex network dynamics,arXiv preprint arXiv:1802.01147, 2018
10. Anirban Chakraborti, Kiran Sharma, Hirdesh K Pharasi, Sourish Das, Rakesh Chatterjee, Thomas H Seligman, Characterization of catastrophic instabilities: Market crashes as paradigm, arXiv preprint arXiv:1801.07213, 2018
11. Amrita Singh, Anirban Chakraborti, Awaneesh Singh, Role of a polymeric component in the phase separation of ternary fluid mixtures: a dissipative particle dynamics study,Volume 14 Issue 21 Pages 4317-4326, Soft matter, 2018
12. Akshansh Gupta, Dhirendra Kumar, Anirban Chakraborti, Hurst Exponent as a New Ingredient to Parametric Feature Set for Mental Task Classification,Pages 129-137, Book Information and Decision Sciences, 2018
13. ANIRBAN CHAKRABORTI, SUJOY CHAKRAVARTY THE SAGA OF KPR: THEORETICAL AND EXPERIMENTAL DEVELOPMENTS,SCIENCE AND CULTURE, 2018

Prof. Andrew Lynn

1. Poonam Vishwakarma, Atanu Banerjee, Ritu Pasrija, Rajendra Prasad, Andrew M Lynn Phylogenetic and conservation analyses of MFS transporters,Volume 8 Issue 11 Pages 462, 3 Biotech, 2018
2. Vijay Kumar, Amresh Prakash, Anil Kumar Tomar, Ankit Srivastava, Bishwajit Kundu, Andrew M Lynn, Md Imtaiyaz Hassan, Exploring the aggregation-prone regions from structural domains of human TDP-43Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics, Elsevier, 2018
3. Sonam Kumari, Mohit Kumar, Nitesh Kumar Khandelwal, Priya Kumari, Mahendra Varma, Poonam Vishwakarma, Garima Shahi, Suman Sharma, Andrew M Lynn, Rajendra Prasad, Naseem A Gaur, ABC transportome inventory of human pathogenic yeast Candida glabrata: Phylogenetic and expression analysis,Volume 13 Issue 8 Pages e0202993, PloS one, 2018
4. Amresh Prakash, Vijay Kumar, Preeti Pandey, Deepak R Bharti, Poonam Vishwakarma, Ruhar Singh, Md Imtaiyaz Hassan, Andrew M Lynn, Solvent sensitivity of protein aggregation in Cu, Zn superoxide dismutase: A molecular dynamics simulation study,Volume 36 Issue 10 Pages 2605-2617, Journal of Biomolecular Structure and Dynamics, 2018
5. Amresh Prakash, Gunjan Dixit, Naveen Kumar Meena, Ruhar Singh, Poonam Vishwakarma, Smriti Mishra, Andrew M Lynn, Elucidation of stable intermediates in urea-induced unfolding pathway of human carbonic anhydrase IX,Volume 36 Issue 9 Pages 2391-2406 Journal of Biomolecular Structure and Dynamics, 2018
6. Sunita Gupta, Andrew M Lynn, Vibha Gupta, Standardization of virtual-screening and post-processing protocols relevant to in-silico drug discovery,Volume 8 Issue 12 Pages 504, 3 Biotech, 2018
7. Mohd Wasi, Nitesh Kumar Khandelwal, Poonam Vishwakarma, Andrew M Lynn, Alok K Mondal, Rajendra Prasad, Inventory of ABC proteins and their putative role in salt and drug tolerance in Debaryomyces hansenii, 676,227-242 Gene, 2018
8. Amresh Prakash, Vijay Kumar, Andrew M Lynn, Rizwanul Haque Andrew M Lynn, Alok K Mondal, Rajendra Prasad, Insights into the DNA binding induced thermal stabilization of transcription factor FOXP3, 1-27, Journal of Biomolecular Structure and Dynamics, 2018
9. Vijay Kumar, Amresh Prakash, Preeti Pandey, Andrew M Lynn, Md Imtaiyaz Hassan, TFE-induced local unfolding and fibrillation of SOD1: bridging the experiment and simulation studiesBCJ20180085 Biochemical Journal, 2018
10. Vijay Kumar, Amresh Prakash, Andrew M Lynn, Alterations in local stability and dynamics of A4V SOD1 in the presence of trifluoroethanol109, 3, e23102, Biopolymers, 2018
11. Amit Rahi, Alisha Dhiman, Damini Singh, Andrew M Lynn, Mohd Rehan, Rakesh Bhatnagar, Exploring the interaction between Mycobacterium tuberculosis enolase and human plasminogen using computational methods and experimental techniques,Volume 119 Issue 2 Pages 2408-2417, 2018 Journal of cellular biochemistry
12. Amresh Prakash, Vijay Kumar, Naveen Kumar Meena, Md Imtaiyaz Hassan, Andrew M Lynn, Comparative analysis of thermal unfolding simulations of RNA recognition motifs (RRMs) of TAR DNA-binding protein 43 (TDP-43),Pages 1-17,2018 Journal of Biomolecular Structure and Dynamics
13. Gagandeep K Khurana, Poonam Vishwakarma, Niti Puri, Andrew Michael Lynn, Phylogenetic Analysis of the vesicular fusion SNARE machinery revealing its functional divergence across Eukaryotes,Volume 14 Issue 7 Pages 361-368, 2018 Bioinformation
14. Amresh Prakash, Vijay Kumar, Naveen Kumar Meena, Andrew M Lynn, Elucidation of the structural stability and dynamics of heterogeneous intermediate ensembles in unfolding pathway of the N-terminal domain of TDP-43,2018 Volume 8 Issue 35 Pages 19835-19845, RSC Advances

Prof. Pradipta Bandyopadhyay

1. Sabeeha Hasnain, Upendra Harbola, Pradipta Bandyopadhyay, A memory-based random walk model to understand diffusion in crowded heterogeneous environment, Volume 32 Issue 16 Pages 1850193, 2018, International Journal of Modern Physics B
2. Preeti Pandey, Rakesh Srivastava, Pradipta Bandyopadhyay, Comparison of molecular mechanics-Poisson-Boltzmann surface area (MM-PBSA) and molecular mechanics-three-dimensional reference interaction site model (MM-3D-RISM) method to calculate the binding free energy of protein-ligand complexes: Effect of metal ion and advance statistical test, Volume 695 Pages 69-78, 2018, Chemical Physics Letters

Prof. Shandar Ahmad

1. Nur SA Ghani, Shandar Ahmad, Mohd Firdaus-Raih, Computational Prediction of Nucleic Acid Binding Residues From Sequence,Volume 1 Pages 678-687, 2018, Book: Encyclopedia of Bioinformatics and Computational Biology
2. Preeti Pandey, Sabeeha Hasnain, Shandar Ahmad, Protein-DNA Interactions,Volume 1 Pages, 142-154, 2018, Book: Encyclopedia of Bioinformatics and Computational Biology
3. Ambuj Srivastava, Shandar Ahmad, M Michael Gromiha, Deciphering RNA-Recognition Patterns of Intrinsically Disordered Proteins.,Volume 19 Issue 6, 2018, International journal of molecular sciences

Prof. BK Kanaujia

1. MK Verma, Binod K Kanaujia, JP Saini, P Saini, A novel circularly polarized gap-coupled wideband antenna with DGS for X/Ku-band applications, Pages 1-12, 2018, Electromagnetics
2. Aijaz M Zaidi, Syed A Imam, Binod K Kanaujia, Karumudi Rambabu, Kunal Srivastava, Mirza Tariq Beg, A new dual band 4 x 4 butler matrix with dual band 3dB quadrature branch line coupler and dual band 45° phase shifter, 2018, AEU-International Journal of Electronics and Communications
3. Praveen Chaurasia, Binod Kumar Kanaujia, Santanu Dwari, Mukesh Kumar Khandelwal, Design and Analysis of Seven-Bands-Slot-Antenna with Small Frequency Ratio for different Wireless Applications, 2018, AEU-International Journal of Electronics and Communications
4. Alaknanda Kunwar, Anil Kumar Gautam, Binod Kr Kanaujia, Karumudi Rambabu, Circularly polarized D‐shaped slot antenna for wireless applications,Pagese21498, 2018, International Journal of RF and Microwave Computer‐Aided Engineering
5. Maksud Alam, BK Kanaujia, MT Beg, Sachin Kumar, Karumudi Rambabu, A hexa‐band dual‐sense circularly polarized antenna for WLAN/Wi‐MAX/SDARS and C‐band applications,Pages e21599, 2018, International Journal of RF and Microwave Computer‐Aided Engineering
6. MK Verma, BK Kanaujia, JP Saini, Design of fan-shaped stacked triple-band antenna for WLAN/WiMAX applications,Volume 38 Issue 7 Pages 469-477, 2018, Electromagnetics
7. Sachin Kumar, Kang Wook Kim, Hyun Chul Choi, Shobhit Saxena, Rahul Tiwari, Mukesh K Khandelwal, Sandeep Kumar Palaniswamy, BK Kanaujia, A low profile circularly polarized UWB antenna with integrated GSM band for wireless communication,Volume 93 Pages 224-232, 2018, AEU-International Journal of Electronics and Communications
8. Dinesh Kumar Singh, Binod Kumar Kanaujia, Santanu Dwari, Ganga Prasad Pandey, Multi band Multi Polarized Reconfigurable Circularly Polarized Monopole Antenna with Simple Biasing Network,2018, AEU-International Journal of Electronics and Communications
9. Ankit Sharma, Deepak Gangwar, Binod Kumar Kanaujia, Santanu Dwari, RCS reduction and gain enhancement of SRR inspired circularly polarized slot antenna using metasurface,Volume 91 Pages 132-142, 2018, AEU-International Journal of Electronics and Communications
10. Praveen Chaurasia, Binod Kumar Kanaujia, Santanu Dwari, Mukesh Kumar Khandelwal, Penta-band microstrip patch antenna with small frequency ratios using metamaterial for wireless applications,1-10, 2018, International Journal of Microwave and Wireless Technologies
11. Neeta Singh, Binod K Kanaujia, Mirza Tariq Beg, Sachin Kumar, Taimoor Khan, A Dual Polarized Multiband Rectenna forRF Energy Harvesting,, 2018, AEU-International Journal of Electronics and Communications
12. Naveen Jaglan, Samir Dev Gupta, Ekta Thakur, Dinesh Kumar, Binod Kumar Kanaujia, Shweta Srivastava, Triple band notched mushroom and uniplanar EBG structures based UWB MIMO/Diversity antenna with enhanced wide band isolation,Volume 90 Pages 36-44, 2018, AEU-International Journal of Electronics and Communications
13. Tanvi Dabas, Deepak Gangwar, Binod Kumar Kanaujia, AK Gautam, Mutual Coupling Reduction between Elements of UWB MIMO Antenna Using Small Size Uniplanar EBG exhibiting Multiple Stop Bands, 2018, AEU-International Journal of Electronics and Communications
14. Shilpee Patil, Anil Kumar Singh, Binod Kumar Kanaujia, Ram Lal Yadava, Design of inclined coupling slot loaded CPW-fed circularly polarized slot antenna for wireless applications,Volume 38 Issue 4 Pages 226-235, 2018, Electromagnetics
15. Kunal Srivastava, Ashwani Kumar, BK Kanaujia, Santanu Dwari, Integrated amateur band and ultra-wide band monopole antenna with multiple band-notched,Volume 105 Issue 5 Pages 741-755, 2018, International Journal of Electronics
16. Yatendra Kumar, Ravi Kumar Gangwar, Binod Kumar Kanaujia, Broadband circularly polarized dipole look‐like F‐shaped antenna with symmetrically inverted F‐shaped modified ground plane,Volume 60 Issue 5 Pages 1100-1108, 2018, Microwave and Optical Technology Letters
17. Kunal Srivastava, Ashwani Kumar, Binod K Kanaujia, Santanu Dwari, Sachin Kumar, Multiband integrated wideband antenna for bluetooth/WLAN applications,Volume 89 Pages 77-84, 2018, AEU-International Journal of Electronics and Communications
18. Amit Kumar, Abdul Quaiyum Ansari, Binod Kumar Kanaujia, Jugul Kishor, High Isolation Compact Four-Port MIMO Antenna Loaded with CSRR for Multiband Applications, 2018, Frequenz
19. Dinesh Kumar Raheja, Binod Kumar Kanaujia, Sachin Kumar, A Dual Polarized Triple Band Stacked Elliptical Microstrip Patch Antenna for WLAN Applications,Pages 1-15, 2018, Wireless Personal Communications
20. Shobhit Saxena, Binod K Kanaujia, Santanu Dwari, Sachin Kumar, Rahul Tiwari, Compact ultra-wideband microstrip antenna with dual polarisation/multi-notch characteristics, 2018, IET Microwaves, Antennas & Propagation
21. Sounik Kiran Kumar Dash, Taimoor Khan, Binod Kumar Kanaujia, Circularly polarized dual facet spiral fed compact triangular dielectric resonator antenna for sensing applications,Volume 2 Issue 1 Pages 1-4, 2018, IEEE sensors letters
22. shobhit Saxena, Binod Kanaujia, Santanu Dwari, Sachin Kumar, Rahul Tiwari, MIMO antenna with built-in circular shaped isolator for sub-6 GHz 5G applications, 2018, Electronics Letters
23. Rohit Gurjar, Dharmendra K Upadhyay, Binod K Kanaujia, Compact four-element 8-shaped self-affine fractal UWB MIMO antenna,Pages1-2, 2018, Microwave and Photonics (ICMAP), Conference
24. Naveen Jaglan, Binod Kumar Kanaujia, Samir Dev Gupta, Shweta Srivastava, Band notched UWB circular monopole antenna with inductance enhanced modified mushroom EBG structures,Volume 24 Issue 2, 2018, Wireless Networks
25. Naveen Jaglan, Binod Kumar Kanaujia, Samir Dev Gupta, Shweta Srivastava, Design of band-notched antenna with DG-CEBG,Volume 105 Issue 1 Pages 58-72, International Journal of Electronics
26. Amit Kumar, Abdul Quaiyum Ansari, Binod Kumar Kanaujia, Jugul Kishor, Nidhi Tewari, Design of Triple-Band MIMO Antenna with One Band-Notched Characteristic,Volume 86 Pages 41-53, 2018, Progress In Electromagnetics Research
27. Rakesh Nath Tiwari, Prabhakar Singh, Binod Kumar Kanaujia, Asymmetric U-shaped printed monopole antenna embedded with T-shaped strip for bluetooth, WLAN/WiMAX applications,Pages 1-11, 2018, Wireless Networks
28. Ankit Sharma, Deepak Gangwar, Binod Kumar Kanaujia, Santanu Dwari, Gain enhancement and broadband RCS reduction of a circularly polarized aperture-coupled annular-slot antenna using metasurface,Pages 1-10, 2018, Journal of Computational Electronics
29. Rakesh N Tiwari, Prabhakar Singh, Binod Kumar Kanaujia, Small-size scarecrow-shaped CPW and microstrip-line-fed UWB antennas, Pages 1-9, 2018, Journal of Computational Electronics
30. Mukesh Kumar Khandelwal, Sachin Kumar, Binod Kumar Kanaujia, Design, modeling and analysis of dual-feed defected ground microstrip patch antenna with wide axial ratio bandwidth,Pages 1-10, 2018, Journal of Computational Electronics
31. Kunal Srivastava, Ashwani Kumar, Binod K Kanaujia, Santanu Dwari, AK Verma, Karu P Esselle, Raj Mittra, Integrated GSM-UWB Fibonacci-type Antennas with Single, Dual and Triple Notched Bands,2018, IET Microwaves Antennas & Propagation
32. Aijaz M Zaidi, Syed A Imam, Binod Kumar Kanaujia, Karumudi Rambabu, A New Equal Power Quadrature Branch Line Coupler for Dual-Band Applications,Volume 74 Pages 61-67, 2018, Progress In Electromagnetics Research
33. Praveen Chaurasia, Binod Kumar Kanaujia, Santanu Dwari, Mukesh Kumar Khandelwal, Antenna with Hexa-Band Capabilities for Multiple Wireless Applications,Volume 82 Pages 109-122, 2018, Progress In Electromagnetics Research
34. Yatendra Kumar, Ravi Kumar Gangwar, Binod Kumar Kanaujia, Compact broadband circularly polarized Hook‐shaped microstrip antenna with DGS plane,e21275, 2018, International Journal of RF and Microwave Computer‐Aided Engineering
35. Shilpee Patil, AK Singh, Binod K Kanaujia, RL Yadava, Design of Dual Band Dual Sense Circularly Polarized Wide Slot Antenna with C-shaped Radiator for Wireless Applications, 2018, Frequenz
36. Naveen Jaglan, Samir Dev Gupta, Binod Kumar Kanaujia, Shweta Srivastava, Ekta Thakur, Triple Band Notched DG-CEBG Structure Based UWB MIMO/Diversity Antenna,Volume 80 Pages 21-37, 2018, Progress In Electromagnetics Research
37. Aijaz M Zaidi, Syed A Imam, Binod K Kanaujia, A Compact Dual-Band N-Way Wilkinson Power Divider for GSM,Pages 263-274, 2018, Advances in Power Systems and Energy Management
38. Samineni Peddakrishna, Taimoor Khan, Binod Kumar Kanaujia, Nasimuddin Nasimuddin, Study of pass band resonance characteristics of aperture type FSS,Volume 83 Pages 479-483, AEU-International Journal of Electronics and Communications
39. Shobhit Saxena, Binod K Kanaujia, Santanu Dwari, Sachin Kumar, Rahul Tiwari, Compact microstrip antennas with very wide ARBW and triple circularly polarized bands,Volume 28 Issue 1 Pages e21162, 2018, International Journal of RF and Microwave Computer‐Aided Engineering

Prof. India Ghosh

1. Taushif Khan, Shailesh Kumar Panday, Indira Ghosh, ProLego: tool for extracting and visualizing topological modules in protein structures,Volume 19 Issue 1 Pages 167, 2018, BMC bioinformatics
2. P Kumar, R Kaalia, A Srinivasan, I Ghosh, Multiple target-based pharmacophore design from active site structures,Volume 29 Issue 1 Pages 1-19, 2018, SAR and QSAR in Environmental Research
3. Gourab Das, Surojit Das, Shanta Dutta, Indira Ghosh, In silico identification and characterization of stress and virulence associated repeats in Salmonella,Volume 110 Issue 1 Pages 23-34, 2018, Genomics

Dr. Narinder Sahni

1. Chakraborty S,Chopra M, Mani K, Giri AK,Banerjee P, Sahni NS, Siddhu A, Tandon N, Bharadwaj D, Prevalence of vitamin B12 deficiency in healthy Indian school-going adolescents from rural and urban localities and its relationship with various anthropometric indices: a cross-sectional study, J Hum Nutr Diet. 2018 Feb 22. doi: 10.1111/jhn.12541, 2018

Dr. Mukesh Jain

1. Rajkumar MS, Garg R, Jain M. (2018) Genome-wide discovery of DNA polymorphisms among chickpea cultivars with contrasting seed size/weight and their functional relevance. Scientific Reports 8, 16795. DOI:10.1038/s41598-018-35140-
2. Chai C, Shankar R, Jain M†, Subudhi P†. (2018) Genome-wide discovery of DNA polymorphisms by whole genome sequencing differentiates weedy and cultivated rice. Scientific Reports 8, 14218, DOI:10.1038/s41598-018-32513-z. †Joint corresponding author
3. Sharma E, Jain M, Khurana JP. (2018) Differential quantitative regulation of specific gene groups and pathways under drought stress in rice. Genomics
4. Bhatia H, Khemka N, Jain M, Garg R. (2018) Genome-wide bisulphite-sequencing reveals organ-specific methylation patterns in chickpea. Scientific Reports 8, 9704. doi: 10.1038/s41598-018-27979-w.
5. Sharma C, Saripalli G, Kumar S, Gautam T, Kumar A, Rani S, Jain N, Prasad P, Raghuvanshi S, Jain M, Sharma JB, Prabhu KV, Sharma PK, Balyan HS, Gupta PK. (2018) A study of transciptome in leaf rust infected bread wheat involving seedling resistance gene Lr28.Functional Plant Biology. Doi: 10.1071/FP17326.
6. Kaashyap M, Ford R, Kudapa H, Jain M, Edwards D, Varshney RK, Mantri N. (2018) Differential regulation of genes involved in root morphogenesis and cell wall modification is associated with salinity tolerance in chickpea. Scientific Reports 8, 4855. Doi: 10.1038/s41598-018-23116-9

Dr. Naidu Subbarao

1. Shashi Shekhar Singh, Sarah Naiyer, Ravi Bharadwaj, Amarjeet Kumar, Yatendra Pratap Singh, Ashwini Kumar Ray, Naidu Subbarao, Alok Bhattacharya, Sudha Bhattacharya, Stress-induced nuclear depletion of Entamoeba histolytica 3′-5′ exoribonuclease EhRrp6 and its role in growth and erythrophagocytosis.,Volume 293 Isue 50 Pages 19510, 2018, The Journal of biological chemistry
2. B.S.Balaji Roshan Tumdam, Amarjeet Kumar, Naidu Subbarao, In Silico Study Directed Towards Identification of Novel High Affinity Inhibitors Targeting An Oncogenic Protein: BRD4-BD1,Volume 29 Issue 12 Pages 975-996, 2018, SAR and QSAR in Environmental Research
3. Dinakara Rao Ampasala Mohd. Babu Khan, Bhagath Kumar Palaka, Tuleshwori Devi Sapam, Naidu Subbarao, Screening and analysis of acetyl-cholinesterase (AChE) inhibitors in the context of Alzheimer’s disease,Volume 14 Issue 8 Pages 414-428, 2018, Bioinformation
4. Chetna Kumari, Naidu Subbarao, Muhammad Abulaish, Predicting JNK1 Inhibitors Regulating Autophagy in Cancer using Random Forest Classifier,Pages 459669,2018, bioRxiv
5. Neeraj Tiwari and Naidu Subbarao Madhulata Kumari, A genetic programming-based approach and machine learning appoches to the classifiction of multiclass anti-malarial datasets,Volume 11 Issue 4 Pages 275-294, 2018, International Journal of computational Biology and Drug Designl
6. Mohamed K Parvez and Naidu Subbarao, Molecular Analysis and modelling of Hepatitis E Helicase, and identification of novel inhibitors by virtual screening,2018, Biomedical Research International
7. Danish Uddin, Naidu Subbarao, Mohammad Faheem, Shahper Nazir Khan, Polycomb repressive complex 2 inhibitors: emerging epigenetic modulators,2018, Drug discovery today
8. Amarjeet Kumar, Suman Dhar, Naidu Subbarao, In-silico identification of Inhibitors against Plasmodium falciparum Histone deacetylase 1 (PfHDAC-1),2018, Journal of Molecular Modeling
9. Khadija Banu, Pallabi Mitra, Naidu Subbarao, Suman Dhar, Role of tyrosine residue (Y213) in nuclear retention of PCNA1 in human malaria parasite Plasmodium falciparum,2018, FEMS Microbiology Letters
10. V Sahu, L Nigam, V Agnihotri, A Gupta, S Shekhar, N Subbarao, S Bhaskar, S Dey, Diagnostic Significance of p38 Isoforms (p38α, p38β, p38γ, p38δ) in Head and Neck Squamous Cell Carcinoma: Comparative Serum Level Evaluation and Design of Novel Peptide Inhibitor Targeting the Same.,2018, Cancer research and treatment: official journal of Korean Cancer Association
11. Amarjeet Kumar and Naidu Subbarao Samina khatun,Riyaz Uddeen, shama yasmeen, calorimetric,spectroscopic and molecular modelling insights into the interaction of gallic acid with bovine serum albumin,2018, Journal of Chemical Thermodynamics
12. Atul Kumar Jaiswal, Syed Hussain Abbas Husaini, Amarjeet Kumar, Naidu Subbarao, Designing novel inhibitors against Mycobacterium tuberculosis FadA5 (acetyl-CoA acetyltransferase) by virtual screening of known anti-tuberculosis (bioactive) compounds,Volume 14 Issue 6 Pages 327-336, 2018, Bioinformation
13. Neeraj Tiwari and Naidu Subbarao Madhulata Kumari, Subhash Chandra, Compartive Analysis ofmachine learning based QSAR models and molecular docking studies to screen potential antituberculosis inhibitors against inhA of Mycobacterium tuberculosis,Volume 11 Issue 3 Pages 209-235, 2018, International Journal of Computational Biology and Drug Design

Dr. RK Brojen Singh

1. Lourembam Herojit Singh, Pooja Sapra, RK Brojen Singh, Development of Algorithm of Traditional Kei-Yen Game,Volume 6 Issue 08 Pages 452018, Journal of Computer and Communications
2. Shahnawaz Ali, Md Zubbair Malik, Soibam Shyamchand Singh, Keilash Chirom, Romana Ishrat, RK Brojen Singh, Exploring novel key regulators in breast cancer network,Volume 13 Issue 6 Pages e0198525, 2018, Journal of theoretical biology
3. Soibam Shyamchand Singh, Dineshchandra Haobijam, Md Zubbair Malik, Romana Ishrat, RK Brojen Singh, Fractal rules in brain networks: Signatures of self-organization,Volume 437 Pages 58-66, 2018, Journal of theoretical biology

Dr. Sapna Ratan Shah

1. Sapna Ratan Shah, Rohit Kumar, Performance of Blood Flow with Suspension of Nanoparticles Through Tapered Stenosed Artery for Jeferey Fluid Model,Volume 17 ,2018,International Journal of Nanoscience

Dr. Annangarachari Krishnamachari

1. Vinod Kumar Singh, Vipin Kumar, Annangarachari Krishnamachari, Prediction of replication sites in Saccharomyces cerevisiae genome using DNA segment properties: multi-view ensemble learning (MEL) approach,Volume 163 Pages 59-69,2018, Biosystems

Dr. Arnab Bhattacherjee

1. Pinki Dey and Arnab Bhattacherjee, Role of Macromolecular Crowding on the Intracellular Diffusion of DNA Binding Proteins,8:844 | DOI:10.1038/s41598-017-18933-3 ,2018, Nature Scientific Reports

Dr. Gajendra Pratap Singh

1. Sangeeta Chaudhary, Gajendra Pratap Singh,  On Interrelationships Between q-Product Identities and Combinatorial Partition Identities,Volume 14 Issue 1 Pages 47-54,2018, J. Calcutta Math. Soc.

Dr. Rita Sharma

1. Siddhartha Kundu, Rita Sharma, Origin, evolution, and divergence of plant class C GH9 endoglucanases,Volume 18 Issue 1 Pages 79 ,2018, BMC evolutionary biology.

 

 

Journals/Research Articles

1. Exploring the interaction between Mycobacterium tuberculosis enolase and human plasminogen using computational methods and experimental techniques, A Rahi, A Dhiman, D Singh, AM Lynn, M Rehan, R Bhatnagar, Journal of Cellular Biochemistry, 2017
2. Solvent sensitivity of protein aggregation in Cu, Zn superoxide dismutase: A molecular dynamics simulation study, Amresh Prakash, Vijay Kumar, Preeti Pandey, Deepak R Bharti, Poonam Vishwakarma, Ruhar Singh, Md Imtaiyaz Hassan, Andrew M Lynn, Journal of Biomolecular Structure and Dynamics, 1-13, 2017
3. Elucidation of stable intermediates in urea-induced unfolding pathway of human carbonic anhydrase IX, Amresh Prakash, Gunjan Dixit, Naveen Kumar Meena, Ruhar Singh, Poonam Vishwakarma, Smriti Mishra, Andrew M Lynn, Journal of Biomolecular Structure and Dynamics, 1-16, 2017
4. Assessing therapeutic potential of molecules: molecular property diagnostic suite for tuberculosis (\mathbf {MPDS}^{\mathbf {TB}}), AS Gaur, A Bhardwaj, A Sharma, L John, MR Vivek, N Tripathi, Andrew M Lynn..., Journal of Chemical Sciences 129 (5), 515-531, 2017
5. QSAR based predictive modeling for anti-malarial molecules, Deepak R Bharti, Andrew M Lynn, Bioinformation 13 (5), 154-159, 2017
6. Identification of inhibitors against α-Isopropylmalate Synthase of Mycobacterium tuberculosis using docking-MM/PBSA hybrid approach, Preeti Pandey, Andrew M Lynn, Pradipta Bandyopadhyay, Bioinformation 13 (5), 144-148, 2017
7. Field Based 3D-QSAR Model of KATP Channel Activation by 4, 6 Di-substituted Benzopyran Derivatives, Yaseen Gigani, Swati Gupta, Andrew Lynn, Kamlesh Asotra, Letters in Drug Design & Discovery, 2017
8. Engineering nucleotide specificity of Succinyl-CoA Synthetase in Blastocystis: The Emerging Role of Gatekeeper Residues, Kapil Vashisht, Sonia Verma, Sunita Gupta, Andrew M Lynn, Rajnikant Dixit, Neelima Mishra, Neena Valecha, Karleigh A Hamblin, Robin Maytum, Kailash C Pandey, Mark van der Giezen, Biochemistry, 2017
9. Design, synthesis, in-silico and biological evaluation of novel donepezil derivatives as multi-target-directed ligands for the treatment of Alzheimer's disease, Chandra Bhushan Mishra, Shikha Kumari, Apra Manral, Amresh Prakash, Vikas Saini, Andrew M Lynn, Manisha Tiwari, European Journal of Medicinal Chemistry, 2017
10. A memory based random walk model to understand diffusion in crowded heterogeneous environment, Sabeeha Hasnain, Upendra Harbola, Pradipta Bandyopadhyay, arXiv preprint arXiv:1712.04151, 2017
11. How Mg2+ ion and water network affect the stability and structure of non-Watson–Crick base pairs in E. coli loop E of 5S rRNA: a molecular dynamics and reference i..., Sudhanshu Shanker, Pradipta BandyopadhyayJournal of Biomolecular Structure and Dynamics, 2017
12. Identification of inhibitors against α-Isopropylmalate Synthase of Mycobacterium tuberculosis using docking-MM/PBSA hybrid approach, Preeti Pandey, Andrew M Lynn, Pradipta Bandyopadhyay, Bioinformation 13 (5), 144-148, 2017
13. Understanding the structure and hydrogen bonding network of (H2O)32 and (H2O)33: an improved Monte Carlo Temperature Basin Paving (MCTBP) method and Quantum Theory of Atoms in Molecules (QTAIM) analysis, Avijit Rakshit, Takamasa Yamaguchi, Toshio Asada and Pradipta Bandyopadhyay, RSC Adv., 2017, 7, 18401
14. Multiple target-based pharmacophore design from active site structures, P Kumar, R Kaalia, A Srinivasan, I Ghosh, SAR and QSAR in Environmental Research, 2017
15. Computational Core for Plant Metabolomics: A Case for Interdisciplinary Research, Vikram Pudi, Pratibha Rani, Abhijit Mitra, Indira Ghosh, Springer, Cham, 2017
16. CRITICAL ASSESSMENT OF CONTRIBUTION FROM INDIAN PUBLICATIONS: THE ROLE OF IN SILICO DESIGNING METHODS LEADING TO DRUGS OR DRUG-..., Pawan Kumar, Gourab Das, Indira GhoshJournal of Proteins & Proteomics, 2017
17. The Cytochrome P450 Complement (CYPome) of Leishmania Leads to the Discovery of a Plant like Cytochrome P450 Sub-family CYP710C1 Gene, Ruby Bansal, Himanshu Bhusan Samal, VS Gowri, Shib Sankar Sen, Indira Ghosh, Rentala Madhubala, Proc Indian Natn Sci Acad, 2017
18. In silico identification and characterization of stress and virulence associated repeats in Salmonella, Gourab Das, Surojit Das, Shanta Dutta,Indira Ghosh, Genomics, 2017
19. ProLego: tool for extracting and visualizing topological modules in protein structures, Taushif Khan, Shailesh Kumar Panday, Indira Ghosh, Cold Spring Harbor Laboratory, 2017
20. A model-free characterization of recurrences in stationary time series, Rémy Chicheportiche, Anirban Chakraborti, 2017, Physica A: Statistical Mechanics and its Applications
21. Econophysics and Sociophysics: Recent Progress and Future Directions, Frédéric Abergel, Hideaki Aoyama, Bikas K Chakrabarti, Anirban Chakraborti, Nivedita Deo, Dhruv Raina, Irena Vodenska, 2017, Springer
22. Reaction-Diffusion Equations with Applications to Economic Systems, Srinjoy Ganguly, Upasana Neogi, Anindya S Chakrabarti, Anirban Chakraborti, 2017, Springer, Cham
23. Kinetic Exchange Models as D Dimensional Systems: A Comparison of Different Approaches, Marco Patriarca, Els Heinsalu, Amrita Singh, Anirban Chakraborti,2017, Springer, Cham
24. The Microscopic Origin of the Pareto Law and Other Power-Law Distributions, Marco Patriarca, Els Heinsalu, Anirban Chakraborti, Kimmo Kaski, 2017, Springer, Cham
25. Patterns of Linguistic Diffusion in Space and Time: The Case of Mazate, Jean Léo Léonard, Els Heinsalu, Marco Patriarca, Kiran Sharma, Anirban Chakraborti, 2017, Springer, Cham
26. A compact microstrip fed dual polarised multiband antenna for IEEE 802.11 a/b/g/n/ac/ax applications, Shobhit Saxena, Binod K Kanaujia, Santanu Dwari, Sachin Kumar, Rahul Tiwari, 2017, AEU-International Journal of Electronics and Communications
27. Defected Ground Structure: Fundamentals, Analysis, and Applications in Modern Wireless Trends, Mukesh Kumar Khandelwal, Binod Kumar Kanaujia, Sachin Kumar, 2017, International Journal of Antennas and Propagation
28. Dual Band Notched EBG Structure based UWB MIMO/Diversity Antenna with Reduced Wide Band Electromagnetic Coupling, Naveen Jaglan, Binod Kumar Kanaujia, Samir Dev Gupta, Shweta Srivastava, 2017, Journal Frequenz
29. A genetic programming-based approach and machine learning appoches to the classifiction of multiclass anti-malarial datasets, Neeraj Tiwari and Naidu Subbarao , Madhulata Kumari, International Journal of computational Biology and Drug Design, 2017
30. Identification of novel inhibitors against UDP-galactopyranose mutase to combat leishmaniasis, Mohammad Kashif, Shams Tabrez, Atahar Husein, Mohd Arish, Ponnusamy Kalaiarasan, Partha Manna, Naidu Subbarao, Yusuf Akhter, Abdur Rub, Journal of Cellular Biochemistry, 2017
31. Compartive Analysis ofmachine learning based QSAR models and molecular docking studies to screen potential antituberculosis inhibitors against inhA of Mycobact..., Neeraj Tiwari and Naidu Subbarao, Madhulata Kumari, Subhash Chandra, International Journal of Computational Biology and Drug Design, 2017
32. Designing novel inhibitors against histone acetyltransferase (HAT: GCN5) of Plasmodium falciparumSuman kumar Dhar Amarjeet kumarar, Krishanu Bhowmick,Kunwar Somesh Vikramdeo , Neelima Mondal, Naidu Subbaraoa, European Journal of Medicinal Chemistry, 2017
33. Analyzing the role of CagV, a VirB8 homologue of the type IV secretion system of Helicobacter pyloriNavin Kumar, Mohd Shariq, Amarjeet Kumar, Rajesh Kumari, Naidu Subbarao, Rakesh K Tyagi, Gauranga Mukhopadhyay,FEBS Open Bio, 2017
34. in vivo anti-inflammatoryactivity and dockin study of newly synthesized benzamidazole derivatives bearing oxadiazole and morpholine rings, M shahar Yar Ankita Rathore, Raja Sudhakar, Mohamed Jawed Ahsan, Abuzer Ali, Naidu Subbarao, Suender Singh Yadav, Sadiq Umer, Bioorganic Chemistry, 2017
35. Design, synthesis of allosteric peptide activator for human SIRT1 and its biological evaluation in cellular model of Alzheimer's diseaseSharmistha Dey Rahul Kumar, Lokesh Nigam, Amrendra Pratap Singh, Kusum Singh, Naidu SubbaraoEuropean Journal of Medicinal Chemistry, 2017
36. Evaluation of predictive models based on Random Forest, Decision Tree, and Support Vector Machine classifiers and virtual screening of anti-mycobacterial compounds, Subhash Chandra Madhulata Kumari, Naidu Subbarao, Neeraj Tiwari, 2017, Int. J. of Computational Biology and Drug Design.
37. Biochemical and Computational Analysis of CagV, a VirB8 homologue of the Cag-T4SS of Helicobacter pylori, Naidu Subbarao, 2017, FWBS Bio Open
38. Allosteric inhibition of topoisomerase I by pinostrobin: Molecular docking, spectroscopic and topoisomerase I activity studies, Alka Jadaun, N Subbarao, Aparna Dixit, 2017, Journal of Photochemistry and Photobiology B: Biology
39. High Throughput Virtual Screening to Identify Novel natural product Inhibitors for Methionyl-tRNA-Synthetase of Brucella melitensis, Naidu SubbaraoMadhulata Kumari, Subhash chandra, Neeraj Tiwari, 2017, bioinformation
40. Fractal rules in brain networks: Signatures of self-organizationSoibam Shyamchand Singh, Dineshchandra Haobijam, Md Zubbair Malik, Romana Ishrat,RK Brojen Singh, Journal of theoretical biology, 2017
41. Identification of Inference Genes in Breast Cancer NetworkKeilash Chirom, Shahnawaz Ali, Md Zubbair Malik, Romana Ishrat, RK Brojen Singh, Journal of Biosciences and Medicines, 2017
42. Dynamical states, possibilities and propagation of stress signal. MZ Malik, S Ali , SS Singh, R Ishrat &K. Brojen Singh. Scientific Reports. 7, 40596 (2017).
43. Complex multifractal nature in Mycobacterium tuberculosis genome. S Mandal, TR Chowdhury, K Chirom, A Bhattachayya &K. Brojen Singh., Scientific Reports, 2017 Apr 25;7:46395. doi: 10.1038/srep46395.
44. Control of apoptosis by SMAR1. MZ Malik, MJ Alam, R Ishrat, SM. Agarwal & K. Brojen Singh., Mol.BioSyst. 13, 350-362 (2017).
45. Identification of inference genes in breast cancer network. K Chirom, S Ali, MZ Malik, R Ishrat & K. Brojen Singh., Journal of Biosciences and Medicines J. Biol. Med. (AcceptedManuscript ID: 2150319) (2017).
46. Power Law Nature in Electron Solid Interaction. MS Singh and K. Brojen Singh. Adv. Mater. Phys. Chem. 7, 11 (2017).
47. Prediction of replication sites in Saccharomyces cerevisiae genome using DNA segment properties: Multi-view ensemble learning (MEL) approach Vinod Kumar Singh, Vipin Kumar, Annangarachari Krishnamachari, Biosystems (In Press), December 2017
48. Identification and Characterization of ARS like sequences as putative origin(s) of replication in human malaria parasite Plasmodium falciparum, Meetu Agarwal,Krishanu Bhowmick, Kushal Shah, A Krishnamachari, Suman K Dhar., Journal: The FEBS Journal, June 2017
49. C Roy, Taimur Khan and  Binod Kr Kanujia, “Conical Dielectric Resonator Antenna with Improved Gain and Bandwidth for X-Band Applications” International Journal of Microwave and Wireless TechnologiesCambridge University Press, (UK) , pp. , 2017. (Accepted)
50. Mukesh k. khandelwal, Binod Kr Kanujiaand Sachin Kuma, “Defected Ground Structure: Fundamentals, Analysis, and Applications in Modern Wireless Trends" International Journal on antenna and propagation., (USA), no., pp.0, 2017.  (Accepted)
51. Naveen Jaglan, Binod K. Kanaujia, Samir D Gupta and Sweta Srivastava “Design of Band Notched antenna with DG-CEBG,” International Journal of Electronics (UK) , pp., 2017. (Accepted)
52. Shobhit Saxena, Binod Kr Kanujia, Santanu Dwari, Sachin Kumar, and Rahul Tiwari, “A Compact Microstrip Fed Dual Polarised Multiband Antenna for IEEE 802.11 a/b/g/n/ac/ax Applications” International Journal of Electronics and CommunicationAEU Elsevier, (Germany) vol. 72, pp. 95-103, 2017.
53. Mukesh k. khandelwal, Binod Kr Kanujia, Sachin Kumar and A. K. Gautam,, “Miniatururization of DNG Metamaterial,” Microwave and Optical Technology Letters, (USA), no., pp.0, 2017. (Accepted)
54. Jugal Kishor, Binod Kr Kanujia,Shantanu Dwari, and Ashwani Kumar, “Design of Differential Mode Bandpass Filter with Common Mode Suppression Using Ring Dielectric Resonator," International Journal of Microwave and Wireless Technologies Cambridge University Press, (UK) , pp. , 2017. (Accepted)
55. C Roy, Taimur Khan and  Binod Kr Kanujia, “Performance Parameters Prediction using Support Vector Machine of Slotted Microstrip Antennas with Modified Ground Plane” International Journal of Microwave and Wireless TechnologiesCambridge University Press, (UK) , pp. , 2017. (Accepted)
56. Jugal Kishor, Binod Kr Kanujia,Shantanu Dwari, and Ashwani Kumar, “Narrow-Band Bandpass Filter For Wireless Communication System” Frequenz  (Germany) , no. , pp.,  2017. (Accepted)
57. Rakesh K. Maurya, Binod K. Kanaujia, A. K. Gautam, S. Chatterji and A. K. Singh, “ANN and ANFIS Analysis Model for Physical Parameters of circularly polarized Annular Ring Slot Antenna with Truncated Corners”, IEEE INDIACom International Conference 2017, BVICAM New Delhi, March, 01-03, 2017 (to be IEEE explores).
58. Sandeep Sharma, S.A. Imam and Binod Kumar Kanaujia, “Bandwidth Enhancement of Microstrip Patch Antenna for Modern Wireless Applications using Defected Ground Structure”, IEEE INDIACom International Conference 2017, BVICAM New Delhi, March, 01-03, 2017 (to be IEEE explores).
59. Kamal Preet Kaur, Neeta Singh and Binod Kumar Kanaujia, “Design of Miniaturized 2.45 GHz Rectenna with Circular Polarization for Wireless Power Transmission”, IEEE INDIACom International Conference 2017, BVICAM New Delhi, March, 01-03, 2017 (to be IEEE explores).
60. Aijaz M. Zaidi, Syed A Imam and Binod Kumar Kanaujia, “A New Dual Band Quadrature Branch Line Coupler for Wireless Local Area Network”, IEEE INDIACom International Conference 2017, BVICAM New Delhi, March, 01-03, 2017 (to be IEEE explores).
61. Priyanka Choudhary, Prateek Singh, Binod Kumar Kanaujiaand Santanu Dwari, “Octa-Band Monopole Antenna for Wireless Communication”, IEEE INDIACom International Conference 2017, BVICAM New Delhi, March, 01-03, 2017 (to be IEEE explores).
62. Ankit Sharma, Santanu Dwari, Deepak Gangwa, Binod Kumar Kanaujiaand Tanvi, “Wide-Band Metamaterial Absorber Surface for Radar Cross Section Reduction”, IEEE INDIACom International Conference 2017, BVICAM New Delhi, March, 01-03, 2017 (to be IEEE explores)
63. PLncPRO for prediction of long non-coding RNAs (lncRNAs) in plants and its application for discovery of abiotic stress-responsive lncRNAs in rice and chickpeaUrminder Singh, Niraj Khemka, Mohan Singh Rajkumar, Rohini Garg, Mukesh Jain, Nucleic Acids Research, Oxford University Press, 2017
64. Genome-wide identification and co-expression network analysis provide insights into the roles of auxin response factor gene family in chickpea, Vikash K Singh, Mohan Singh Rajkumar, Rohini Garg, Mukesh Jain, Scientific Reports, 2017
65. Garg R, Singh VK, Rajkumar MS, Kumar V, Jain M.(2017) Global transcriptome and co- expression network analyses reveal cultivar-specific molecular signatures associated with seed development and seed size determination in chickpea. The Plant Journal doi: 10.1111/tpj.13621.
66. Bhattacharjee A, Sharma R, Jain M.(2017) Over-expression of OsHOX24 confers enhanced susceptibility to abiotic stresses in transgenic rice via modulating stress-responsive gene expression. Frontiers in Plant Science 8, 628. doi: 10.3389/fpls.2017.00628.
67. Understanding the Role of DNA Topology in Target Search Dynamics of Proteins, Anupam Mondal & Arnab Bhattacherjee*, Journal of Physical Chemistry B, DOI: 10.1021/acs.jpcb.7b08199, 2017
68. Safe Navigation of Mobile Robot Using A* Algorithm, Hasan Mujtaba, Gajendra P. SinghInternational Journal of Applied Engineering Research, 2017
69. Sweet sorghum as biofuel feedstock: recent advances and available resourcesSupriya Mathur, AV Umakanth, VA Tonapi, Rita Sharma, Manoj K Sharma, Biotechnology for Biofuels, 2017
70. Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xant...Chang-Jin Park, Tong Wei, Rita Sharma, Pamela C Ronald, Rice, 2017
71. Sweet sorghum as biofuel feedstock: recent advances and available resources, AV Supriya Mathur, AV Umakanth, VA Tonapi, Rita Sharma, Biotechnology for Biofuels, 2017
72. MicroRNAs as targets for engineering biofuel feedstock Sorghum, Namrata Dhaka, Rita Sharma, Indian Journal of Plant Physiology, 2017
73. Conservation and dispersion of genes conferring resistance to tomato begomoviruses between tomato and pepper genomes, Manisha Mangal, Arpita Srivastava, Rita Sharma, Pritam Kalia, Frontiers in plant science, 2017
74. Classification Based Network Layer Botnet Detection, Shivangi Garg, RM Sharma,Advanced Informatics for Computing Research, 2017
75. Corrigendum: Comparative phylogenomic analysis provides insights into TCP gene functions in Sorghum, Aleena Francis, Namrata Dhaka, Mohit Bakshi, Ki-Hong Jung, Manoj K Sharma, Rita Sharma,2017, Scientific Reports
76. Evolving Tale of TCPs: New Paradigms and Old Lacunae, Namrata Dhaka, Vasudha Bhardwaj, Manoj K Sharma, Rita Sharma, 2017, Frontiers in Plant Science

 

 

 

Journals/Research Articles

1. Y Gigani, S Gupta, A Lynn, K Asotra, BKCa CHANNEL BASED CHEMICAL ENTITY RECOGNITION USING PATENT DATA CURATION AND MOLECULAR FIELD ALIGNMENT TECHNIQUE, Pharmacophore An International Research Journal 7 (4)
2. A Qayum, R Arya, AM Lynn , Ethnobotanical perspective of antimalarial plants: traditional knowledge based study, BMC research notes 9 (1), 67
3. M Kamran, S Sinha, P Dubey, AM Lynn, SK Dhar, Identification of putative Z‐ring‐associated proteins, involved in cell division in human pathogenic bacteria Helicobacter pylori, FEBS letters 590 (14), 2158-2171
4. D Singh, S Rawat, M Waseem, S Gupta, A Lynn, M Nitin, N Ramchiary, ... Molecular modeling and simulation studies of recombinant laccase from Yersinia enterocolitica suggests significant role in the biotransformation of non-steroidal anti-inflammatory drugs, Biochemical and biophysical research communications 469 (2), 306-312
5. Co-movements in financial fluctuations are anchored to economic fundamentals: A mesoscopic mapping, K Sharma, B Gopalakrishnan, AS Chakrabarti,A Chakraborti, arXiv preprint arXiv:1612.05952.
6. Resonance Raman scattering and ab initio calculation of electron energy loss spectra of MoS 2 nanosheets, A Chakraborti, AS Patel, PK Kanaujia, P Nath, GV Prakash, D Sanyal, Physics Letters A 380 (48), 4057-4061.
7. Can an interdisciplinary field contribute to one of the parent disciplines from which it emerged? A Chakraborti, D Raina, K Sharma, The European Physical Journal Special Topics 225 (17-18), 3127-3135.
8. Investigating resonance energy transfer from protein molecules to van der Waals nanosheets, AS Patel, P Mishra, PK Kanaujia, SS Husain, GV Prakash, A Chakraborti, arXiv preprint arXiv:1611.07182.
9. Thermal Equilibrium in D-dimensions: From Fluids and Polymers to Kinetic Wealth Exchange Models, M Patriarca, E Heinsalu, A Singh, A Chakraborti, arXiv preprint arXiv:1610.03367.
10. Sectoral co-movements in the Indian stock market: A mesoscopic network analysis, K Sharma, S Shah, AS Chakrabarti, A Chakraborti, arXiv preprint arXiv:1607.05514.
11. Physicists' approach to studying socio-economic inequalities: Can humans be modelled as atoms? K Sharma, A Chakraborti, arXiv preprint arXiv:1606.06051.
12. Gold nanoflowers as efficient hot-spots for surface enhanced Raman scattering. AS Patel, S Juneja, PK Kanaujia, GV Prakash, A Chakraborti, arXiv preprint arXiv:1604.02793.
13. Quantifying invariant features of within-group inequality in consumption across groups. Anindya S Chakrabarti, Arnab Chatterjee, Tushar K Nandi, Asim Ghosh, Anirban Chakraborti.
14. Invariant features of spatial inequality in consumption: The case of India. A Chatterjee, AS Chakrabarti, A Ghosh, A Chakraborti, TK Nandi, Physica A: Statistical Mechanics and its Applications 442, 169-181.
15. Performance Evaluation of Empirical Mode Decomposition Algorithms for Mental Task Classification. A Gupta, D Kumar, A Chakraborti, K Sharma. bioRxiv, 076646.
16. P Prathipati, C Nagao, S Ahmad, K Mizuguchi, Improved pose and affinity predictions using different protocols tailored on the basis of data availability, Journal of computer-aided molecular design 30 (9), 817-828.
17. M Fernandez, S Ahmad, JI Abreu, A Sarai, Large-scale recognition of high-affinity protease–inhibitor complexes using topological autocorrelation and support vector machines, Molecular Simulation 42 (5), 420-433.
18. VK Singh,A Krishnamachari,Context based computational analysis and characterization of ARS consensus sequences (ACS) of Saccharomyces cerevisiae genome: Genomics Data 9, 130-136 (2016)
19. Madhulata Kumari, Subhash Chandra, Neeraj Tiwari and Naidu Subbarao, High throuput virtual screening to identify Novel inhibitors for Mehionyl-tRNA synthetase of Brucella mellitensis, Bioinformation 2016
20. Ramachandran Vijayan, Naidu Subbarao, Natesan Manoharan Computational Study Enlightens the Structural Role and Molecular Mechanism of Marine Algal Compound Fucoidan against Hepatocellular Carcinoma Markers, International Journal of Bioscience, Biochemistry and Bioinformatics(2016) ,321-328
21. A Jadaun, N Subbarao, A Dixit Allosteric inhibition of topoisomerase I by pinostrobin: Molecular docking, spectroscopic and topoisomerase I activity studies Accepted for publication Journal of Photochemistry and Photobiology B: Biology 2016
22. Hit To Lead Optimization, And 3D QSAR Modeling of Imidazolopiperazines Derivatives against Malaria Based On PLSR Machine Learning Technique, M Kumari, N Tiwari, N Subbarao, S Chandra, Imperial Journal of Interdisciplinary Research 2 (12), 2016
23. in vivo anti-inflammatoryactivity and dockin study of newly synthesized benzamidazole derivatives bearing oxadiazole and morpholine rings M shahar Yar Ankita Rathore, Raja Sudhakar, Mohamed Jawed Ahsan, Abuzer Ali, Naidu Subbarao, Suender Singh Yadav, Sadiq Umer ... Bioorganic Chemistry, 2016
24. Design, synthesis of allosteric peptide activator for human SIRT1 and its biological evaluation in cellular model of Alzheimer's disease, SD Rahul Kumar, Lokesh Nigam, Amrendra Pratap Singh, Kusum Singh, Naidu Subbarao, European Journal of Medicinal Chemistry, 2016
25. 3D QSAR, pharmacophore and molecular docking studies of known inhibitors and designing of novel inhibitors for M18 aspartyl aminopeptidase of Plasmodium falciparum, Neeraj Tiwari and Naidu Subbarao, Madhulata Kumari, Subhash Chandra, BMC Structural Biology, 2016
26. Interaction of the recently approved anticancer drug nintedanib with human acute phase reactant α 1-acid glycoprotein, AS Abdelhameed, MR Ajmal, K Ponnusamy, N Subbarao, RH Khan, Journal of Molecular Structure 1115, 171-179, 2016
27. Docking and Molecular Dynamics simulation study of EGFR1 with EGF like peptides to understand molecular interactions, Naidu SubbaraoRajasudhakar, Kalaisaran Ponnusamy, Molecular Biosystems, 2016
28. 3D QSAR basedhit to lead optimization of Imidazolopiperazines derivatives against P.falciparum, Neeraj Tiwari and Naidu Subbaraoand Subhash Chandra Madhulata Kumari,, Imperial Journal of Interdisciplinary Research 2 (12), 2016
29. Designing, synthesis and antimicrobial action of oxazoline and thiazoline derivatives of fatty acid esters, Naidu Subbaraoand Asad U Khan Anis Ahmad, D.Raja Sudhakar, journal of Biomolecular Structure and dynamics, 2016
30. Pharmacophore based virtual screening for identification of marine bioactive compounds as inhibitors against macrophage infectivity potentiator (Mip) protein of Chlamydia trachomatis, Subbarao Naiduand Manoharan Natesan Vijayan Ramachandran , Elavarasi Padmanaban, Kalaiarasan Ponnusamy, RSC Advances, 2016
31. Transcription regulation of nuclear receptor PXR: role of SUMO-1 modification and NDSM in receptor function RT Priyanka, Naidu Subbarao, Niti Puri, Molecular and Cellular Endocrinology 420, 194-207, 2016
32. Arnab Bhattacherjee, Dana Krepel and Yaakov Levy, Coarse-grained models for studying protein diffusion along DNA: WIREs Computational Molecular Science 2016. doi: 10.1002/wcms.1262 (2016)
33. Rajan Shrivastava, Avijit Rakshit, Sudhanshu Shanker, Lovekesh Vig, Pradipta Bandyopadhyay, A combination of Monte Carlo Temperature Basin Paving and graph theory: water cluster low energy structures and completeness of search. J.Chem.Sci (2016), 128, 1507.
34. Priya Singh,  Bandyopadhyay, S. K. Sarkar,Folding-unfolding transition in the mini-protein villin headpiece (HP35): An equilibrium study using the Wang-Landau algorithm. Chem. Phys., 468, 1-8 (201
35. Sudhanshu Shanker and Pradipta Bandyopadhyay, J.Bio.Str.Dyn. (in press, 2016), How Mg2+ ion and water network affect the stability and structure of non-Watson-Crick base pairs in E coli Loop E of 5S rRNA: A Molecular Dynamics and Reference Interaction Site Model (RISM) study.
36. Asada, K.Ando, P.Bandyopadhyay, S.Koseki, Free Energy Contribution Analysis using Response Kernel Approximation: Insights into the Acylation Reaction for beta–lactamase, J.Phys.Chem.B( in press), 2016
37. Kaalia, I. Ghosh, Semantics based approach for analyzing disease-target associations, Journal of Biomedical Informatics 62 June (2016) 125–135
38. Rama Kaalia, Ashwin Srinivasan,Amit Kumar and Indira Ghosh; ILP-assisted de novo drug design. Machine Learning, June 2016, Volume 103, Issue 3, pp 309–341,published online , DOI 10.1007/s10994-016-5556-x. March 2016.
39. Sandeep Kumar, Binod K. Kanaujia, Shantanu Dwari, Ganga Prasad Pandey, and Dinesh Kumar Singh, “11–17 GHz Reconfigurable Stacked Power Amplifier Using Matched Slant Microstrip Line for Ku Band Application,” Wireless Personal Communication Springer vol. , pp., 2016. (Accepted)
40. Sachin Kumar, Binod Kr Kanujia, Mukesh k. khandelwal and A. K. Gautam, “Single-Feed Superstrate Loaded Circularly Polarized Microstrip Antenna for Wireless Applications,” Wireless Personal Communication Springer vol. , pp.1-11, 2016. (Accepted)
41. Naveen Jaglan, Binod K. Kanaujia, samir D Gupta and Sweta Srivastava “Triple Band Notched UWB Antenna Design Using Electromagnetic Band Gap Structures,”Progress In Electromagnetics Research C (USA) vol. 66, pp.139-147, 2016.
42. Naveen Jaglan, samir D Gupta, Binod K. Kanaujia and Sweta Srivastava “Band Notched UWB Circular Monopole Antenna with Inductance Enhanced modified mushroom EBG structures,” Wireless Networks Springer vol. , pp. , 2016. (Accepted)
43. Yadav, A.K.Gautam, Anil k Sinh, Binod Kr Kanaujia and K Rambabu, “Design of Band-Rejected UWB Planar Antenna with Integrated Bluetooth Band” IET Microwaves, Antenna & Propagation, (UK) vol. , no. , pp. , 2016. (Accepted).
44. Binod Kr Kanujia, Mukesh k. khandelwal, Santanu Dwari, Sachin Kumar and A. K. Gautam, “Analysis and Design of Compact High Gain Microstrip Patch Antenna with Defected Ground Structure for Wireless Applications,” Wireless Personal Communication, Springer vol. , pp. , 2016. (Accepted)
45. Sandeep Kumar, Mitul Handa, Himanshu Bhasin and Binod K. Kanaujia, Shantanu Dwari, “Optimized Threshold Voltage Variation for Tunable Body Biasing CMOS Power Amplifier",” Wireless Personal Communication, Springer vol. , pp. , 2016. (Accepted)
46. Kunal Srivastava, Ashwani Kumar, A.K Verma,Q. Zhang, Binod Kr Kanujia, and S Dwari, “Integrated GSM and UWB Fractal Monopole Antenna with Triple Notches,” Microwave and Optical Technology Letters, (USA) vol.58, no.10, pp.2364-2366, 2016.
47. Anil kumar Singh, Ravi kumar Gangwar, and Binod Kr Kanujia, “Circularly Polarized Annular Ring Microstrip Antenna for High Gain Application,”Electromagnetic, Taylor and Francis vol.36, no.6, pp.379-391, 2016
48. Pallavi Bartwal, A.K.Gautam, Anil k Sinh, Binod Kr Kanaujia and K Rambabu, “Design of Compact Multi-Band Meander-Line Antenna for GPS/WLAN/WiMAX band Applications in Laptops/Tablets” IET Microwaves, Antenna & Propagation, (UK) vol. , no. , pp. , 2016. (Accepted).
49. Jugal Kishor, Binod Kr Kanujia, Shantanu Dwari, and Ashwani Kumar, “Bandpass Filter Using Dielectric Resonator with Transmission Zeros,” Microwave and Optical Technology Letters, (USA) vol.58, no.7, pp.1583-1586, 2016.
50. Kunal Srivastava, Ashwani Kumar, and Binod Kr Kanujia, “Design of Compact Penta-Band and Hexa-Band Microstrip Antennas” Frequenz (Germany) vol. 70, no. 3-4, pp.101-111, Jan. 2016.
51. P. Keshari, Binod Kr Kanujia, Mukesh k. khandelwal, Pritam Singh Bakariya and R. M. Mehra, “Single-Feed Circularly Polarized Stacked Patch Antenna with Small Frequency Ratio for Dual-Band Wireless Applications” International Journal of Microwave and Wireless Technologies Cambridge University Press, (UK) vol. , pp. , 2016. (Accepted)
52. K.Gautam, Lalit Kumar, Binod Kr Kanaujiaand K Rambabu, “Design of Compact F-shaped slot Triple Band Antenna for WLAN/WiMAX Applications” IEEE Trans. Antennas Propagat., (USA) vol. 64, no. 03, pp. 1101-1105, March 2016.
53. Akanksha Farswan, A.K.Gautam, Binod Kr Kanaujiaand K Rambabu, “Design of Koch Fractal Circularly Polarized Antenna for Handheld UHF RFID Reader Applications” IEEE Trans. Antennas Propagat., (USA) vol. 64, no. 2, pp. 771-775, 2016.
54. Yadav, A. K. Gautam, and Binod Kr Kanujia, “Design of miniaturized single band notch micro strip antenna with enhanced UWB performance,” Microwave and Optical Technology Letters, (USA) vol. 58, no. 6, pp. 1494-1499, 2016.
55. Kunal Srivastava, Ashwani Kumar, and Binod Kr Kanujia, “Design of Compact Penta-Band Microstrip Antennas,” Microwave and Optical Technology Letters,(USA) vol. 58, no. 4, pp. 836-838, 2016.
    2016. Gautam, A. Bisht and Binod Kr Kanujia, “A Wideband Antenna With Defected Ground Plane for WLAN/WiMAX Applications” International Journal of Electronics and Communication AEU Elsevier, (Germany) vol. 70, no. 3, pp. 354-358, 2016.
56. Anil kumar Singh, Ravi kumar Gangwar, and Binod Kr Kanujia, “Sectored Annular Ring Microstrip Antenna with DGS for Circular Polarization,” Microwave and Optical Technology Letters, (USA) vol.58, no.3, pp.569-573, 2016.
57. Deepak Gangwar, Sushrut Das, R. L. Yadav and  K. Kanaujia, “Circularly Polarized Inverted Stacked High Gain Antenna with Frequency Selective Surface,” Microwave and Optical Technology Letters, (USA) vol.58, no.3, pp.732-740, 2016.
58. Sharma M.K*., Sharma R., Cao P., Harkenrider M., Jenkins J., Grimwood J., Zhang J., Udvardi M.K., Schmutz J. and Ronald P.C. (2015) Targeted switchgrass BAC library screening and sequence analysis identifies predicted biomass-related and stress response-related genes. BioEnergy Research, 9 (1): 109-122.
59. Sharma R., Wungrampha W., Singh V., Pareek A. and Sharma, M.K. (2016) Halophytes as Bioenergy Crops. Frontiers in Plant Science doi: 10.3389/fpls.2016.01372.
60. Kundu S., Sharma R.(2016) In silico Identification and taxonomic distribution of plant class C GH9 endoglucanases. Frontiers in Plant Science http://dx.doi.org/10.3389/fpls.2016.01185.
61. Chandran A.K.N., Yoo Y.H., Cao P., Sharma R., Sharma M.K., Dardick C., Ronald P.C. and Jung K.H. (2016) Updated rice kinase database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes. Rice 9:40
62. Harkenrider M., Sharma R., Vleesschauwer D.D., Tsao, L., Zhang X., Chern M., Canlas P., Zuo S. and Ronald P.C. (2016) Overexpression of rice Wall-Associated Kinase 25 (WAK25) alters resistance to bacterial and fungal pathogens. Plos One 11 (1):e0147310.
63. Gupta P., Sharma R., Sharma M.K., Sharma M.P., Stapute G.K., Garg S., Singla-Pareek, S.L., Pareek A. (2016) Signaling cross talk between biotic and abiotic stress responses in soybean. Abiotic and Biotic Stresses in Soybean Production: Soybean Production, Volume 1, 27-52.
64. Khemka N, Singh VK, Garg R, Jain M.(2016) Genome-wide analysis of long intergenic non-coding RNAs in chickpea and their potential role in flower development. Scientific Reports 6, 33297. doi:10.1038/srep33297
65. Shankar R, Bhattacharjee A, Jain M. (2016) Transcriptome analysis in different rice cultivars provides novel insights into drought and salinity stress responses. Scientific Reports 6, 23719. DOI: 10.1038/srep23719.
66. Bhattacharjee A, Khurana JP, Jain M.(2016) Characterization of rice homeobox genes, OsHOX22 and OsHOX24, and over-expression of OsHOX24 in transgenic Arabidopsis suggest their role in abiotic stress response. Frontiers in Plant Science 7, 627. doi: 10.3389/fpls.2016.00627.
67. Jain M, Srivastava PL, Verma M, Ghangal R, Garg R. (2016) De novo transcriptome assembly and comprehensive expression profiling in Crocus sativus to gain insights into apocarotenoid biosynthesis. Scientific Reports 6, 22456. doi: 10.1038/srep22456.
68. Garg R, Shankar R, Thakkar B, Kudapa H, Krishnamurthy L, Mantri N, Varshney RK, Bhatia S, Jain M.(2016) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea. Scientific Reports 6, 19228. doi: 10.1038/srep19228
69. Kotwal S, Kaul S, Sharma P, Shankar R, Jain M, Dhar M. (2016) De novo transcriptome analysis of medicinally important Plantago ovata using RNA-Seq. PLoS ONE 11,e0150273. doi:10.1371/journal.pone.0150273.
70. Dixit AB, Banerjee J, Srivastava A, Tripathi M, Sarkar C, Kakkar A, Jain M, Chandra S. (2016) RNA-Seq analysis of hippocampal tissues reveals novel candidate genes for drug refractory epilepsy in patients with MTLE-HS. Genomics 107, 178-188.
71. Singh, G.P., Sangita Kansal, Basic Results on Crisp Boolean Petri Nets, In:Modern Mathematical Methods and High Performance Computing in Science and Technology, 83-88, Chapter 6, Springer proceedings in Mathematics & Statistics, Series 171 (Edition No.1), ISBN 978-981-10-1454-6, Springer Singapore, 2016
72. Singh, G.P., Applications of Petri nets in electrical, electronics and optimizations, Procedings of International Conference on Electrical, Electronics, and Optimization Techniques IEEE XCplore, catalog 978-1-4673-9939-5/16, 2016.
73. Jameson Maibam, Kh. Kabita, B. Indrajit Sharma, Dineshchandra Haobijam , K. Brojenand R. K. Thapa, Density Functional Theory Study of Structural and Electronic Properties of Group V Transition Metal Carbides, 10.15415/jnp.2016.32017
74. Soibam Shyamchand Singh · Budhachandra Khundrakpam · Andrew T. Reid · John D. Lewis · Alan C. Evans · Romana Ishrat · B. Indrajit Sharma ·  K. Brojen Singh, scaling in topological properties of brain networks, Scientific Reports, 6:24926 (2016)
75. Moirangthem Shubhakanta Singh, and  K. Brojen Singh, Power law nature in electron solid interaction, Advances in Materials Physics and Chemistry (AMPC), 10.4236/ampc.2017.71002
76. Zubbair Malik, Md. Jahoor Alam, Romana Ishrat, Subhash M. Agarwal and R. K. Brojen Singh, Control of apoptosis by SMAR1, Molecular BioSystems, Accepted, DOI: 10.1039/c6mb00525j (2016)
77. Kabita, BI Sharma, J.Maibam, R.K. Brojen Singhand R.K. Thapa, Structural phase transition of indium arsenide induced pressure: a density functional theory study, J. Appl. Fund. Sc., 1, 10

 

Journals/Research Articles

1. Sarbashis Das , B.M. Fredrik Pettersson , Phani Rama Krishna Behra , Malavika Ramesh , Santanu Dasgupta , Alok Bhattacharya , and Leif A. Kirsebom, Characterization of Three Mycobacterium spp. with Potential Use in Bioremediation by Genome Sequencing and Comparative Genomics Genome Biol. Evol. 7(7):1871–1886
2. Tanmoy Roychowdhury , Saurav Mandal & Alok Bhattacharya, Analysis of IS6110 insertion sites provide a glimpse into genome evolution of Mycobacterium tuberculosis(2015) Scientific Reports | 5:12567 | DOI: 10.1038/srep12567
3. Avni Sinha, Kandasamy Eniyan, Swati Sinha, Andrew Michael Lynn, Urmi Bajpai Functional analysis of TPM domain containing Rv2345 of Mycobacterium tuberculosis identifies its phosphatase activity, Elsevier, doi:10.1016/j.pep.2015.03.003
4. Abdul Qayum, Rakesh Arya, Pawan Kumar, Andrew M Lynn, Socio-economic, epidemiological and geographic features based on GIS-integrated mapping to identify malarial hotspots, Malaria Journal (Impact Factor: 3.11). 05/2015; 14(1):192. DOI: 10.1186/s12936-015-0685-4 Source: PubMed
5. Deepti Singh, Surender Rawat, Mohd Waseem,Sunita Gupta, Andrew M Lynn, Molecular modeling and simulation studies of recombinant laccase from Yersinia enterocolitica suggests significant role in the biotransformation of non-steroidal anti-inflammatory drugs Biochemical and Biophysical Research Communications (Impact Factor: 2.3). 12/2015; 469(2). DOI: 10.1016/j.bbrc.2015.11.096
6. “Statistical mechanics of competitive resource allocation using agent-based models”, A. Chakraborti, D. Challet, A. Chatterjee, M. Marsili, Y.-C. Zhang, B.K. Chakrabarti, Physics Reports 552, 1-25 (2015).
7. “Invariant features of spatial inequality in consumption: the case of India”, Arnab Chatterjee, Anindya S. Chakrabarti, Asim Ghosh, Anirban Chakraborti, Tushar K. Nandi, Physica A 442, 169-181 (2016).
8. Singh, G.P. and Kansal, K., Basic Results on Crisp Boolean Petri Nets, accepted for the publication in LNCS, Springer.
9. Kansal, S., Singh, G.P. and Acharya, M., On the problem of characterizing Boolean Petri nets, Int. Jr. of Comp. Appli., Found. of Comp. Sci., New York, USA, 128(2), October 2015, 1-4, ISBN 973-93-80889-69-7.
10. Singh, G.P., Basic properties of Petri nets, SRMS Journal of Mathematical Sciences, pub- lished by Department of Mathematics, Shri Ram Murti Smarak College of Engg. & Tech., Bareilly-243202, U.P., India, 1(1), 2015, 54-71, ISBN: 2394-725X.
11. Singh, G.P., Kansal, S. and Acharya, M., Characterization of Boolean Petri net containing strong chain cycle, submitted to Elsevier.
12. Khan ,Taushif & Ghosh Indira; Modularity in protein structures: A study on all alpha proteins. Journal of Biomolecular Structure & Dynamics, 2015 Feb 11:1-15.
13. Rama Kaalia,Amit Kumar,Ashwin Srinivasan, and Indira Ghosh;, An Ab Initio Method for Designing Multi-Target Specific Pharmacophores using Complementary Interaction Field of Aspartic Proteases. Mol. Inf. 2015, 34, 2 –16
14. Topological variance in protein structure: an insight from kinetics and functional study T Khan, I Ghosh , Journal of Biomolecular Structure and Dynamics 33 (sup1), 113-114
15. Garg R, Shankar R, Thakkar B, Kudapa H, Krishnamurthy L, Mantri N, Varshney RK, Bhatia S, Jain M. (2015) Transcriptome analyses reveal genotype- and developmental stage-specific molecular responses to drought and salinity stresses in chickpea.Scientific Reports (accepted). (IF = 5.578)
16. Mohd Shariq; Navin Kumar; Rajesh Kumari; Amarjeet Kumar; Naidu Subbarao; Gauranga Mukhopadhyay, Biochemical Analysis of CagE: a VirB4 Homologue of Helicobacter pylori Cag-T4SS PlosOne(2015)
17. Priyanka, Naidu Subbarao, Niti Puri, Rakesh Tyagi Transcription regulation of nuclear receptor PXR: role of SUMO-1 modification and NDSM in receptor function, Molecular and Cellular Endocrinology,2015
18. Sumit K Chaturvedi; Parvez Alam; Javed M Khan; Mohammad K Siddiqui; Zeeshan Ahmad; Ponnusamy Kalaiarasan; Naidu Subbarao; Biophysical insight into the anti-amyloidogenic behavior of taurine, International Journal of Biological Macromolecules, 80, 375-384(2015)
19. Mohd Ishtikhar, Mohd. Sajid Ali, Ayman M. Atta, H. A. Al-Lohedan, Lokesh Nigam, Naidu Subbarao, Rizwa H Khan, Interaction of biocompatible natural rosin-based surfactants with human serum albumin: A biophysical study Journal of luminiscence,167, 399-407(2015)
20. Functional dissection of Proliferating Cell Nuclear Antigens (1&2) in human malarial parasite Plasmodium falciparum : possible involvement in DNA replication and DNA damage response, Biochemical Journal, 470 (1), 115-129(2015)
21. Mohammad Hassan Baig, Khurshid Ahmad, Qambar Hasan, Mohd Kalim Ahmad Khan, Naidu Subbarao, Mohammad Amjad Kamal and Inho Choi Interaction of glucagon G-protein coupled receptor with known natural anti-diabetic compounds: Multi-scoring in silico approach. Evidence-Based Complementary and Alternative Medicine Special issue on "Herbal Medicines and Natural Products Targeting G Protein-Coupled Receptors in Management of Diseases", Article ID 497253, 6 pages, . doi:10.1155/2015/497253 (2015)
22. Vijayan Ramachandran, Subbarao Naidu and Manoharan Natesan Discovery of Marine Sponge Compound as Promising Inhibitor for Macrophage Infectivity Potentiator (Mip) Protein against Chlamydia pneumoniae.International journal of Bioscience, Biochemisty and Bioinformatics,6,5(3),202-210, 2015
23. Alka Jadaun, Raja Sudhakar.D, N. Subbarao and Aparna Dixit “In silico screening for novel inhibitors of DNA polymerase III Alpha Subunit of Mycobacterium tuberculosis (MtbDnaE2, H37Rv), 13,3, e0119760 PLOSOne(2015)
24. Ponnusamy Kalaiarasan, Bhupender Kumar, Rupali Chopra, Vibhor Gupta, Naidu Subbarao, Rameshwar NK Bamezai silico Screening, Genotyping, Molecular Dynamics Simulation and Activity studies of SNPs in Pyruvate Kinase M2, 10 (3), 1-21 PloseOne(2015)
25. Ramachandran Vijayan, N.Subbarao, Natesan Manoharan In silico Analysis of Conformational Changes Induced by Normal and Mutation of Macrophage Infectivity Potentiator catalytic residues and its Interactions with Rapamycin, Interdisciplinary Sciences: Computational Life Science(2015), 7,1-8
26. Sharma, S., Kumar, A., Kundu, S. and Bandyopadhyay, P. (2015), Molecular dynamics simulations indicate that tyrosineB10 limits motions of distal histidine to regulate CO binding in soybean leghemoglobin. Proteins, 83: 1836–1848. doi:10.1002/prot.24867
27. An analytical correlated random walk model and its application to understand subdiffusion in crowded environment, J. Chem. Phys. 143, 114104 (2015); http://dx.doi.org/10.1063/1.4930275
28. Jasleen Gundh, Awaneesh Singh, R. K. Brojen Singh. Ordering Dynamics in Neuron Activity Pattern Model: An Insight to Brain Functionality. PloS One (2015) DOI: 10.1371/journal.pone.0141463.
29. G.R. Devi, Md.J. Alam and R.K. Brojen Singh. Synchronization in stress p53 network. Math. Med. Biol. (2015) doi: 10.1093/imammb/dqv002.
30. Md. Z. Malik, S. Ali, Md.J. Alam, R. Ishrat and R.K. Brojen Singh. Dynamics of p53 and Wnt cross talk. Comp. Biol. Chem. (Accepted) doi:10.1016/j.compbiolchem.2015.07.014 (2015).
31. Md.J. Alam, S. Kumar, V. Singh and R.K. Brojen Singh. Bifurcation in cell cycle dynamics regulated by p53. PloS One (2015) DOI: 10.1371/journal.pone.0129620.
32. Md.J. Alam, V. Singh and R.K. Brojen Singh. Switching Mechanism in the p53 Regulatory Network. Chapter, Syst. And Synthetic Biol. 195-216 (2015).
33. Kh. Kabita, B. I. Sharma, J. Maibam, R. K. Brojen Singh and R.K. Thapa. Structural Phase Transition of Indium Arsenide under induced pressure: A Density functional theory study. J. Appl. Fund. Sc. 1, 2395-5562 (2015). 34. M Jameson, Kh. Kabita, B.I. Sharma, B. Ramendu, RK Thapa, R.K. Brojen Singh. Density Functional Theory: Band Structure. Inv. J. Renew. Energy 5, 2231-3419 (2015).
34. Kh. Kabita, M Jameson, B.I. Sharma, RK Thapa, R.K. Brojen Singh. First principle study on pressure-induced electronic structure and elastic properties of indium phosphide (InP). DOI:10.1007/s12648-015-0701-0 (2015).
35. Kh. Kabita, B. Indrajit Sharma, Jameson Maibam, R. K. Brojen Singh and R.K. Thapa. STRUCTURAL PHASE TRANSITION OF INDIUM ARSENIDE UNDER INDUCED PRESSURE: A DENSITY FUNCTIONAL THEORY STUDY. J. Appl. Fund. Sc. 1, 2395 (2015).
36. K Kabita, J Maibam, B I Sharma, R K Thapa and R K Brojen Singh. First principle study on pressure-induced electronic structure and elastic properties of indium phosphide (InP). Ind. J. Phys. 89, 1265 (2015).
37. Kh Kabita, Jameson Maibam, B Indrajit Sharma, R K Brojen Singh and R K Thapa. First principles phase transition, elastic properties and electronic structure calculations for cadmium telluride under induced pressure: density functional theory, LDA, GGA and modified Becke–Johnson potential. Mat. Res. Exp. 3, 015901 (2016).
38. Kh. Kabita, M. Jameson, B.I. Sharma, R.K. Brojen Singh, R.K. Thapa. A detailed first principle study on the structural, elastic, and electronic properties of indium arsenide (InAs) under induced pressure. Can. J. Phys. (doi: 10.1139/cjp-2015-0275) (2015).
39. Kh. Kabita, Jameson Maibam, Indrajit Sharma, R. K. Brojen Singh, R.K. Thapa. Adv. Sc. Lett. 21, 2906 (2015).
40. Maibam Jameson,Kh. Kabita, B I. Sharma, Bhattacharjee Ramendu,Thapa R.K., R. K. Brojen Singh. Density Functional Theory: Band Structure. Inv. J. Ren. En. 5, 2231 (2015).
41. Sharma M.K*., Sharma R*., Cao P., Harkenrider M., Jenkins J., Grimwood J., Zhang J., Udvardi M.K., Schmutz J. and Ronald P.C. (2015) Targeted switchgrass BAC library screening and sequence analysis identifies predicted biomass-related and stress response-related genes. BioEnergy Research, DOI 10.1007/s12155-015-9667-1. *First Co-Author
42. Jung K.H., Cao P., Sharma R., Jain R., and Ronald, P.C. (2015) Phylogenomics databases for facilitating functional genomics in rice. Rice, 8: 26.
43. Sharma R., Mishra M., Gupta B., Parsania C., Pareek S.L.S., and Pareek A. (2015) De Novo assembly and characterization of stress transcriptome in a salinity-tolerant variety CS52 of Brassica juncea. Plos One. 10(5):e0126783.
44. Lao J., Sharma M.K., Sharma R., Fernandez-Nino S.M G., Schmutz J., Ronald P.C., Haezlewood J.L., and Schwessinger. (2015) Proteome profile of the endomembrance of developing coleoptiles from switchgrass (Panicum virgatum).Proteomics. DOI: 10.1002/pmic.201400487
45. Manoj Agarwal, Naveen Kumar, and Lovekesh Vig, "Parallel Multi Objective Coalition Formation", Expert Systems and Applications, 42 (21), 7797-7811, 2015
46. Pankaj Malhotra, Lovekesh Vig, Gautam Shroff and Puneet Agarwal, "Long Short Term Memory Networks for Anomaly Detection in Time Series", European Symposium on Artificial Neural Networks, Belgium, 2015
47. Sucheta Chouhan and Lovekesh Vig, "Anomaly Detection in ECG Time Signals through Deep Long Short-Term Memory based Recurrent Neural Network Architecture" , DSAA, Paris, 2015
48. Urminder Singh, Sucheta Chouhan, A. Krishnamachari and Lovekesh Vig, "Ensemble of Deep Long Short Term Memory Networks for Labelling Origin of Replication Sequences", DSAA, Paris, 2015
49. Book Chapters/Conference Proceedings
50. “Econophysics and Data Driven Modelling of Market Dynamics”, Eds. F. Abergel, H. Aoyama, B. K. Chakrabarti, A. Chakraborti and A. Ghosh, (Springer, Milan, 2015).
51. “Physicists’ Approaches to a Few Economic Problems”, Anirban Chakraborti, Yoshi Fujiwara, Asim Ghosh, Jun-ichi Inoue and Sitabhra Sinha, in Eds. F. Abergel, H. Aoyama, B. K. Chakrabarti, A. Chakraborti and A. Ghosh, Econophysics and Data Driven Modelling of Market Dynamics (Springer, Milan, 2015).
52. “Maximizing a Psychological Uplift in Love Dynamics”, M. Banerjee, A. Chakraborti and J. Inoue, in Eds. R. Lopez-Ruiz, D. Fournier-Prunaret, Y. Nishio, C. Gracio, Nonlinear Maps and their Applications, Springer Proceedings in Mathematics & Statistics (Springer International Publishing, Switzerland, 2015).
53. Eds. A Chakraborti, S Chatterjee and P Pradhan, “Proceedings of the STATPHYS-KOLKATA VIII”, Journal of Physics: Conference Series 638 (2015).
54. “Preface: STATPHYS-KOLKATA VIII”, A Chakraborti, S Chatterjee and P Pradhan, Journal of Physics: Conference Series 638, 011001 (2015).
55. “Kinetic Exchange Models in Economics and Sociology”, S. Goswami and A. Chakraborti, in Eds. R. Lopez-Ruiz, D. Fournier-Prunaret, Y. Nishio, C. Gracio, Nonlinear Maps and their Applications, Springer Proceedings in Mathematics & Statistics (Springer International Publishing, Switzerland, 2015).
56. “Essentials of Econophysics Modelling”, Physics Today 68, 1, 44 (2015), A. Chakraborti; Book written by František Slanina, Oxford U. Press, 2014. (411 pp.).
57. “Spatiotemporal pattern formation in a prey-predator model under environmental driving forces”, Anuj Kumar Sirohi; Banerjee, Malay; Chakraborti, Anirban, Journal of Physics: Conference Series 638, pp. 12004-12014 (2015).
58. Ankit Verma, Ramya Hebbalaguppe, Lovekesh Vig, Swagat Kumar and Ehtesham Hassan, "Pedestrian Detection via Mixture of CNN Experts and Thresholded Aggregate Channel Features", IEEE International Conference on Computer Vision (ICCV) Workshop on Assistive Technologies, 2015
59. Gaurangi Anand, Ah Kazmi, Pankaj Malhotra, Lovekesh Vig, Gautam Shroff, Puneet Agarwal,"Deep Temporal Features to Predict Repeat Buyers", NIPS Workshop on Learning for E-Commerce, Montreal, 2015
60. Mohit Yadav, Pankaj Malhotra, S. Sriram, Gautam Shroff, Lovekesh Vig, "Augmenting Time series data with ODE models for Anomaly Detection", NIPS Workshop on Time Series Analysis, Montreal, 2015

 

 

Journals/Research Articles

1. Alka Jadaun, Raja Sudhakar.D, N. Subbarao and Aparna Dixit “In silico screening for novel inhibitors of DNA polymerase III Alpha Subunit of Mycobacterium tuberculosis (MtbDnaE2, H37Rv)", Accepted in PLOSOne
2. Kumar M, Gantasala NP, Roychowdhury T, Thakur PK, Banakar P, Shukla RN, Jones MG, Rao U "De novo transcriptome sequencing and analysis of the cereal cyst nematode, Heterodera avenae", PLoS One. 2014 May 6;9(5):e96311. doi: 10.1371/journal.pone.0096311. eCollection 2014. PMID: 24802510
3. Ponnusamy Kalaiarasan, Bhupender Kumar, Rupali Chopra, Vibhor Gupta, Naidu Subbarao, Rameshwar NK Bamezai, "silico Screening, Genotyping, Molecular Dynamics Simulation and Activity studies of SNPs in Pyruvate Kinase M2", Accepted in PloseOne(2014)
4. Palash Nath,Anirban Chakraborti and D. Sanyal “Ab initio calculation of magnetic properties of p-block element doped ZnO”, Royal Society of Chemistry Adv.,2014,4, 45598
5. R. Chicheportiche and A. Chakraborti, “Copulas and time series with long-ranged dependences”, Phys. Rev. E (2014)89, 042117
6. A. Chakraborti, D. Challet, A. Chatterjee, M. Marsili, Y.-C. Zhang, B.K. Chakrabarti“Statistical mechanics of competitive resource allocation using agent-based models”,, Physics Reports, doi:10.1016/j.physrep. (2015)2014.09.006.
7. R.K. Brojen Singh, Numerical Detection of Stochastic to Deterministic Transition. J. Compt. Nonlinear Dyn. (2014) Doi:10.1115/1.4027441.
8. Kh. Kabita, J. Maibam, B. I. Sharma, R.K.Thapa and R.K. Brojen Singh, "Density Functional Theory Study of Electronic Structure, Elastic Properties and Phase Transition of Gallium Phosphide (GaP)", Adv. Sc. Eng. Med. (2014) 6, 354.
9. BA Ahanger, R. K. Brojen Singh and Z. A. Ansari, "Thermal Perturbation in Dye-SensitizedSolar Cell", Mat. Focus (2014), 3,1–5.
10. Shefeeq. T, N Ahmad, Ravins, R. K. Brojen Singh, "Diffusional Drug Release from Cylindrical Matrices Into a Finite Medium with Boundary Layer Effect", Adv. Sc. Eng. Med. 6, 948 (2014)
11. Shahnawaz Ali, Md. Z. Malik, Md. J. Alam, R Ishrat and R. K. Brojen Singh,. "Evolutionary trace analysis of p53 protein: A statistical analysis of conserved aminoacids in p53 protein", Accepted in J. Bioinformatics and Int. Control(2014).
12. Gurumayum Reenaroy Devi , Md. Jahoor Alam, and R.K. Brojen Singh, "Synchronization in stress p53 network. Mathematical Medicine and Biology(2014)", (Accepted)
13. Kh. Kabita, Jameson Maibam, B. Indrajit Sharma, R. K. Brojen Singh and R. K. Thapa, "Density functional theory study on pressure induced structural transformation, elastic properties and electronic structure of gallium arsenide (GaAs)", Int. J. of Innov. and Appl. Sts. (2014) 8, 382-393
14. Nafis, S., Kalaiarasan, P., Singh, R. B., Husain, M., & Bamezai, R. N, "Apoptosis regulatory protein–protein interaction demonstrates hierarchical scale-free fractal network. Briefings in bioinformatics", (2014)doi: 10.1093/bib/bbu036
15. Agarwal, M., Kumar, N., & Vig, L., "Non-additive multi-objective robot coalition formation. Expert Systems with Applications", (2014) 41(8), 3736-3747.
16. Amit Srivastava, Rupali Chopra, Shafat Ali, Shweta Agarwal, Lovekesh Vig, and Ramesh Bamezai, "Inferring population structure and relationships using minimal independent markers in Y-chromosome: a hybrid approach of recursive feature selection for hierarchical clustering", Nucleic Acids Research, 2014, 42 (15),
17. Khan, Taushif; Ghosh, Indira, "Modularity in protein structures: A study on all alpha proteins",  Journal of Biomolecular Structure & Dynamics(2014) (Accepted for publication).
18. Harsh Parikh, Apoorvi Singh, Annangarachari Krishnamachari and Kushal Shah, "Computational prediction of origin of replication in bacterial genomes using correlated entropy measure (CEM)", BioSystems(2014) (accepted)
19. Mohd Danishuddin, Arbab Khan, Mohammad Faheem, Ponnusamy Kalaiarasan, Mohd Hassan Baig, Naidu Subbarao and Asad U. Khan, "Structure-based screening of inhibitors against KPC-2: designing potential drug candidates against multidrug-resistant bacteria", Journal of Biomolecular Structure and Dynamics, (2014), Vol 32, 5, 741-750
20. Kamaldeep Gill, Lokesh Nigam, Ratnakar Singh,Suresh Kumar, Naidu Subbarao,Dhyam Singh Chauhan, Sharmistha Dey, "The Rational Design of Specific Peptide Inhibitor against p38α MAPK at Allosteric-Site: A Therapeutic Modality for HNSCC(2014)", PlosOne (2014) 9 (7), e101525
21. Yachana Jha, Gaurav Sablok, Naidu Subbarao, Raja Sudhakar, M. H. U. Turabe Fazil, R. B. Subramanian, Andrea Squartini and Sunil Kumar, "Bacterial-induced expression of RAB18 protein in Orzya sativa salinity stress and insights into molecular interaction with GTP ligand. Journal of Molecular Recognition" (2014) 27 (9), 521-527
22. Mohd H Baig, D Raja Sudhakar, Ponnusamy Kalaiarasan, Gulshan Wadhawa, Naidu Subbarao Mohtashim Lohani, Asad U Khan "Effect of inhibitor resistant S130G mutant on physico-chemical properties of SHV type beta-lactamase", PLOSOne(2014),9(12), e112456
23. Ponnusamy Kalaiarasan, Subarao Naidu, Rameshwar NK Bamezai, "Molecular simulation of Tyr105 phosphorylated Pyruvate kinase M2 to understand its Structure and Dynamics", in Journal of Molecular Modeling(2014),20,9,1-12
24. Amit Kumar, Nidhi Agarwal, Lalit Pant, Jay Prakash Singh, Indira Ghosh, Naidu Subbarao, "PfalDB: An Integrated Drug Targets and Chemical Database for Plasmodium falciparum", Current Drug Targets(2014),15,12,1089-1093
25. Vijayan Ramachandran, Naidu Subbarao, "Manoharan Natesan Homology modeling of LAMMER kinase of Plasmodium falciparum and to identify the interaction of crtical resdiues involved in binding of ATP by Molecular docking simulation study", International Journal of Advanced Life Sciences(2014),7,2,311-320.
26. Sinha, S., & Lynn, A. M, "HMM-ModE: implementation, benchmarking and validation with HMMER3". BMC research notes, (2014)7(1), 483.
27. Qayum, A., Lynn, A. M., & Arya, R. "Traditional Knowledge System Based GIS Mapping of Antimalarial Plants: Spatial Distribution Analysis. Journal of Geographic Information System", (2014),6(05), 478.
28. P Narang, S Khan, AJ Hemrom, AM Lynn, "MetaNET-a web-accessible interactive platform for biological metabolic network analysis". BMC Systems Biology(2014) 8 (1), 130.
29. S Singh, U Bajpai, AM Lynn, "Structure based virtual screening to identify inhibitors against MurE Enzyme of Mycobacterium tuberculosis using AutoDock Vina", Bioinformation(2014) 10 (11), 697
30. Kumari, R., Kumar, R., Consortium, O. S. D. D., & Lynn, A.M, "g_mmpbsa-A GROMACS tool for high-throughput MM-PBSA calculations. Journal of chemical information and modeling" (2014)54 (7), pp 1951–1962.
31. Meher, B. R., Kumar, M. V. S., & Bandyopadhyay, P. "Interchain hydrophobic clustering promotes rigidity in HIV-1 protease flap dynamics: new insights from Molecular Dynamics. Journal of Biomolecular Structure and Dynamics", (2014)32(6), 899-915.
32. Hasnain, S., McClendon, C. L., Hsu, M. T., Jacobson, M. P., & Bandyopadhyay, P. "A New Coarse-Grained Model for E. coli Cytoplasm: Accurate Calculation of the Diffusion Coefficient of Proteins and Observation of Anomalous Diffusion. PloS one", (2014)9(9), e106466.
33. Sahu, N., Gadre, S. R., Rakshit, A., Bandyopadhyay, P., "Miliordos, E., & Xantheas, S. S.. Low energy isomers of (H2O) 25 from a hierarchical method based on Monte Carlo temperature basin paving and molecular tailoring approaches benchmarked by MP2 calculations. The Journal of chemical physics", (2014),141(16), 164304.
34. Singh, P., Sarkar, S. K., & Bandyopadhyay, P, "Wang-Landau density of states based study of the folding-unfolding transition in the mini-protein Trp-cage (TC5b). The Journal of chemical physics", (2014)141(1), 015103.
35. Hasnain, S., Jacobson, M. P., & Bandyopadhyay, P., "A comparative Brownian dynamics investigation between small linear and circular DNA: Scaling of diffusion coefficient with size and topology of DNA. Chemical Physics Letters", (2014), 591, 253-258.
36. Jean-Numa Gillet, "Ultrafast molecular dynamics of biofuel extraction for microalgae and bacteria milking: blocking membrane folding pathways to damaged lipid-bilayer conformations with nanomicelles," in Journal of Biomolecular Structure and Dynamics, Published online: April, 15, 2014, DOI: 10.1080/07391102.2014.907544
37. MJ Alam, V Singh, RK Brojen Singh, "Switching Mechanism in the p53 Regulatory Network Systems and Synthetic Biology" (Book Chapter) (2014) 

 

 

 

Journals/Research Articles

1. Ashutosh Vishwa Bandhu, Neha Aggarwal and Supratim Sengupta , "Revisiting the Physico-Chemical Hypothesis of Code Origin: An Analysis Based on Code-Sequence Coevolution in a Finite Population", Origins of Life and Evolution of Biospheres 43(6):465-489 (2013) DOI: 10.1007/s11084-014-9353-x
2. Manoj Agarwal, Naveen Kumar, Lovekesh Vig, "Non-additive multi-objective robot coalition formation Expert Systems and Applications", Volume 41, Issue 8, 2014 Pages 3736-3747
3. Kh. Kavita Devi, J. Maibam, BI Sharma, R.K. Thapa and R.K. Brojen Singh, "DFT study of electronic structure, elastic properties and phase transition of GaP" Adv. Sc. Eng. Med. 6, 354 (2014).
4. Jameson Maibam, Kh. Kabita, B. Indrajit Sharma, R. K. Thapa and R. K. Brojen Singh. DFT study on electronic structures and elastic properties of AgX (X=C, N) in rock salt structure (2013) In. J. of Sc. Techn. (Accepted).
5. Kh. Kavita Devi, J. Maibam, BI Sharma, R.K. Brojen Singh and R.K. Thapa. First principle calculation of pressure induced phase transition and band structure of GaP.
6. Aiman Ahmad, Anis Ahmad, Himani Varshney, Abdul Rauf, Mohd Rehan, Naidu Subbarao, Asad U. Khan, "Designing and synthesis of novel antimicrobial heterocyclic analogs of fatty acids", Accepted 21 October 2013. http://dx.doi.org/10.1016/j.ejmech.2013.10.051
7. Suehiro Iwata ,Pradipta Bandyopadhyay , and Sotiris S. Xantheas, "Cooperative Roles of Charge Transfer and Dispersion Terms in Hydrogen-Bonded Networks of (H2O)n, n = 6, 11, and 16", J.Phys.Chem. A, 2013, 117 (30), pp 6641–6651. http://pubs.acs.org/doi/abs/10.1021/jp403837z
8. Avijit Rakshit, Pradipta Bandyopadhyay, "Finding low energy minima of (H2O)25 and (H2O)30 with temperature basin paving Monte Carlo method with effective fragment potential: New 'global minimum' and graph theoretical characterization of low energy structures", Theoretical and Computational Chemistry, 2013 (In press)
9. Biswa Ranjan Meher , Mattaparthi Venkata Satish Kumar, Pradipta Bandyopadhyay, "Inter-chain hydrophobic clustering promotes rigidity in HIV-1 protease flap dynamics: New insights from Molecular Dynamics",Journal of Biomolecular Structure & Dynamics (In Press, 2013)
10. Pradipta Bandyopadhyay, "Increasing the efficiency of Monte Carlo simulation with sampling from an approximate potential.",Chem. Phys. Lett. 556, 341 (2013)
11. Ravi Datta Sharma, Rajnee Kanwal, Andrew M. Lynn, Prerna Singh, Syed Tazeen Pasha, Tasneem Fatma, Safdar Jawaid, "High temperature unfolding of a truncated hemoglobin by molecular dynamics simulation",Journal of molecular modeling 19 (9), 3993-4002 http://link.springer.com/article/10.1007/s00894-013-1919-4
12. Manpreet Kaur Rawal, Mohammad Firoz Khan, Khyati Kapoor, Neha Goyal, Sobhan Sen, Ajay Kumar Saxena, Andrew M Lynn, Joel DA Tyndall, Brian C Monk, Richard D Cannon, Sneha Sudha Komath, Rajendra Prasad, "Insight into Pleiotropic Drug Resistance ATP-binding Cassette Pump Drug Transport through Mutagenesis of Cdr1p Transmembrane Domains",Journal of Biological Chemistry 288 (34), 24480-24493 http://www.jbc.org/content/288/34/24480.short
13. Indresh Kumar Maurya, Chaitanya Kumar Thota, Sachin Dev Verma, Jyotsna Sharma, Manpreet Kaur Rawal, Balaguru Ravikumar, Sobhan Sen, Neeraj Chauhan, Andrew M Lynn, Virander Singh Chauhan, Rajendra Prasad, "Rationally designed transmembrane peptide mimics of the multidrug transporter protein Cdr1 act as antagonists to selectively block drug efflux and chemosensitize azole-resistant clinical isolates of Candida albicans",Journal of Biological Chemistry 288 (23), 16775-16787 http://www.jbc.org/content/288/23/16775.short
14. Ashutosh Shandilya, Sajeev Chacko, B. Jayaram & Indira Ghosh, "A plausible mechanism for the antimalarial activity of artemisinin: A computational approach", Nature, SCIENTIFIC REPORTS vol 3 : 2513 , 2013, DOI:10.1038/srep02513
15. Vivek Kumar Singh, Indira Ghosh, "Methylerythritol phosphate pathway to isoprenoids: Kinetic modeling and in silico enzyme inhibitions in Plasmodium falciparum" in FEBS Letters , Accepted 17 June 2013. http://dx.doi.org/10.1016/j.febslet.2013.06.024
16. Rentala Madhubala, V S Gowri, Indira Ghosh, Amit Sharma, "Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major", in BMC Genomics ( 2013).
17. Jean-Numa Gillet and Indira Ghosh, "Concepts on the protein folding problem , in Journal of Biomolecular Structure and Dynamics", online 2013, http://dx.doi.org/10.1080/07391102.2012.748546
18. Hosseini Ashraf, Indira Ghosh, Pramod Khandekar, Mohammad Hiresh Ayoubian, "Simple sequence repeats in specific gene groups of shigella genome", IOABJ; Vol. 4: Issue 1;17–24(2013).
19. Mohd Danishuddin, Arbab Khan, Mohammad Faheem, Ponnusamy Kalaiarasan, Mohd Hassan Baig, Naidu Subbarao and Asad U. Khan, "Structure-based screening of inhibitors against KPC-2: designing potential drug candidates against multidrug-resistant bacteria", Accepted in Joural of Biomolecular Structure and Dynamics, (2013) DOI:10.1080/07391102.2013.789988
20. Nida Zaidi, Ejaz Ahmad, Mohd Rehan, Gulam Rabbani, Mohammad R. Ajmal, Yusra Zaidi, Naidu Subbarao and Rizwan H. Khan, "Biophysical Insight into Furosemide Binding to Human Serum Albumin: A Study To Unveil Its Impaired Albumin Binding in Uremia", Accepted in publication the journal of PHYSICAL CHEMISTRY B , (2013) DOI: 10.1021/jp3069877
21. Jean-Numa Gillet. "Ultralow Thermal Conductivity Minimum in Silicon Supercrystals with Weakly and Strongly Bonded Germanium Nanodots for Thermoelectrics", ACS Sustainable Chemistry and Engineering., 1 (6), pp. 611-618, DOI: 10.1021/sc400020c (2013).

 

Journals/Research Articles

1. Kamaldeep Gill, Abhay K. Singh , Vaishali Kapoor, Lokesh Nigam , Rahul Kumar, Prasida Holla, Satya N. Das, Savita Yadav, Naidu Subbarao, Bidhu Kalyan Mohanti, Sharmistha Dey, "Development of peptide inhibitor as a therapeutic agent against head and neck squamous cell carcinoma (HNSCC) targeting p38α MAP kinase", Accepted for Publication in Biochimica et Biophysica Acta(2012).
2. Ashish Gupta, Lovekesh Vig and David C. Noelle, "A Cognitive Model for Automaticity in Motor Skill Learning", Journal of Robotic and Intelligent Systems, 2012 (In Press)
3. Shikha Pal, Madhur Mishra, D. Raja Sudhakar, Mohammed Haris Siddiqui, "In‐silico designing of a potent analogue against HIV‐1 Nef protein and protease by predicting its interaction network with host cell proteins, Journal of Pharmacy and Bioallied Sciences", January-March 2013 Vol 5 Issue 1
4. Sanjiv K Dwivedi and S. Sengupta, " Classification of HIV-1 sequences using profile Hidden Markov Models", PLoS One 7(5):e36566 (2012).
5. S. Sengupta, J. Derr, A. Sain and A.D. Rutenberg, "Stuttering Min oscillations within E. coli bacteria: a stochastic polymerization model", Physical Biology, 9, 056003 (2012).
6. Singh P and Sengupta S, "Phylogenetic analysis and comparative genomics of purine riboswitch distribution in prokaryotes", Evolutionary Bioinformatics 8, 589-609 .
7. Sarbashis Das, Priyanka Duggal, Rahul Roy, Vithal P. Myneedu, Digamber Behera, Hanumanthappa K. Prasad & Alok Bhattacharya , "Identification of Hot and Cold spots in genome of Mycobacterium tuberculosis using Shewhart Control Charts", Nature Scientific Reports- http://dx.doi.org/10.1038/srep00297
8. Chung-Chau Hon, Christian Weber,Odile Sismeiro, Caroline Proux,Mikael Koutero,Marc Deloger,Sarbashis Das, Mridula Agrahari, Marie-Agnes Dillies, Bernd Jagla, Jean-Yves Coppee3, Alok Bhattacharya and Nancy Guillen, "Quantification of stochastic noise of splicing and polyadenylation in Entamoeba histolytic, Nucleic Acid Research", (2012) 1-17, doi: 10.1093/nar/gks1271
9. Jonathan P. Furado, Anuja P Rahalkar, Sudhanshu Sjankar, Pradipa Bandhyopadhyay and Sridhar R Godre, "Facilitating minima search for large water clusters at MP2 level via Molecular tailoring", J.Phy.Chem. Letters(2012)
10. Biswaranjan Meher, Mattaparthi Venkata Satish Kumar, Smriti Sharma and Pradipta Bandhyopadhyay, "Conformational Dynamics of HIV-1 protease: a comparative dynamic simulation study with multiple amber force fields", Journal of Bioinformatics and computational biology(2012)
11. Sudhanshu Shankar and Pradipta Bandhyopadhyay, "Determination of low energy structures of a small RNA hairpin using Monte Carlo based techniques", J.Biosciences 37(3) 533-538
12. Uddipan Sarma, Archana Sareen, Moitrayee Maiti, Vanita Kamat, Raki Sudan, Sushmita Pahari,Neetu Srivastava, Somenath Roy, Sitabhra Sinha, Indira Ghosh, Ajit G. Chande, Robin Mukhopadhyaya, Bhaskar Saha, "Modeling and Experimental Analyses Reveals Signaling Plasticity in a Bi-Modular Assembly of CD40 Receptor Activated Kinases" PLoS ONE (2012),7: July 2012 e39898 doi:10.1371/journal.pone.0039898
13. Uddipan Sarma & Indira Ghosh, "Oscillations in MAPK cascade triggered by two distinct designs of coupled positive and negative feedback loops" BMC Research Notes. (2012) 5:287 DOI:10.1186/1756-0500-5-2872012.
14. Uddipan Sarma & Indira Ghosh , "Different designs of kinase-phosphatase interactions and phosphatase sequestration shapes the robustness and signal flow in the MAPK cascade" BMC Systems Biology. (2012 ) 6:82 DOI:10.1186/1752-0509-6-82.
15. Rithvik Vinekar, Chandra Verma, Indira Ghosh , "Functional relevance of dynamic properties of dimeric NADP-dependent isocitrate dehydrogenases" BMC Bioinformatics (2012) Volume 13 Supplement 17, S 2.
16. Mobashar Hussain Urf Turabe Fazil, Sunil Kumar, Naidu Subba Rao , Chandrabose Selvaraj, Sanjeev Kumar Singh, Haushila Prasad Pandey & Durg Vijai Singh, "Comparative structural analysis of two proteins belonging to quorum sensing system in Vibrio cholerae , Journal of Biomolecular Structure and Dynamics", DOI:10.1080/07391102.2012.687523
17. Smriti Sharma and Pradipta Bandyopadhyay, "Investigation of the acylation mechanism of class C beta-lactamase: pKa calculation, molecular dynamics simulation and quantum mechanical calculation", Journal of molecular modeling(2012), v18, 481-492
18. Rupesh Kumar, Amitabha Bose, Birendra Nath Mallick, "A Mathematical Model towards Understanding the Mechanism of Neuronal Regulation of Wake-NREMS-REMS States", PLOSOne, 7(8), : e42059. doi:10.1371/journal.pone.0042059
19. Kushal Shah and A. Krishnamachari. "Nucleotide correlation based measure for identifying origin of replication in genomic sequences", BioSystems vol. 107 (1), 52-55,2012
20. Kushal Shah and A. Krishnamachari. "On the origin of three base periodicity in genomes", BioSystems, vol.103(3) 142-144,2012.
21. Rentala Madhubala, V S Gowri, Indira Ghosh, Amit Sharma. “Unusual domain architecture of aminoacyl tRNA synthetases and their paralogs from Leishmania major” in BMC Genomics ( 2013).
22. Jean-Numa Gillet and Indira Ghosh. “Concepts on the protein folding problem” in Journal of Biomolecular Structure and Dynamics, in press (2013).
23. Ajeet Mandal, Antresh Kumar, Ashutosh Singh , AndrewM.Lynn , Khyati Kapoor and Rajendra Prasad, "A key structural domain of the Candida albicans Mdr1 protein", Biochem. J. (2012) 445 (313–322)
24. DA Gideon, R Kumari, AM Lynn, KM Manoj, "What is the Functional Role of N-terminal Transmembrane Helices in the Metabolism Mediated by Liver Microsomal Cytochrome P450 and its Reductase?", Cell Biochemistry and Biophysics, 1-11
25. Priya Singh and Pradipta Bandyopadhyay, "Accurate Calculation of the Density of States near the Ground-State Energy of the Peptides Met-Enkephalin and (Alanine)5 with the Wang-Landau Method: Lessons Learned", Journal of Atomic, Molecular, and Optical Physics, Volume 2012 (2012), doi:10.1155/2012/782806

A Book Chapter

1. Kushwaha Hemant Ritturaj and Ghosh Indira , “Bioinformatics Approach for Finding Target Protein in Infectious Disease” In Bioinformatics of Human Proteomics, Translational Bioinformatics 3, DOI 10.1007/978-94-007-5811-7_10, X. Wang (ed.), © Springer Science+Business Media Dordrecht 2013.
2. Kushwaha Hemant Ritturaj and Ghosh Indira. ”Target Identification using Systems Approach in Infectious Diseases” . In TRANSLATIONAL RESEARCH IN NEW DRUG DEVELOPMENT. Ed. Ray Arunabha & Gulati Kavita ( V.P, India ), 2012.
3. Kushwaha HR, Ghosh I, Pareek A. "General overview of bioinformatics tools in agricultural sciences. In: Biotechnology in agricluture and medicine" : Principles & Practice. ed. Gupta AK, Pareek A, Gupta SM.(I. K. International, INDIA),2011

 

 

Journals/Research Articles

1. Fractal symmetry of protein interior: what have we learned? Anirban Banerji & Indira Ghosh in Cellular and Molecular Life Sciences , (2011) Aug;68(16):2711-3726.
2. Plant Stress Gene Database: A Collection of Plant Genes Responding to Stress Condition by Ratna Prabha, Indira Ghosh , Dhananjaya P. Singh in ARPN Journal of Science and Technology, VOL. 1, NO. 1, November 2011.
3. Rout AK, Padhan N, Barnwal RP, Bhattacharya A, Chary KVR.1. “Calmodulin-like protein of Entamoeba histolytica: Solution structure and calcium binding properties of partially folded protein”. Biochem. 50, 181-193 (2011)
4. Somlata, Bhattacharya S., Bhattacharya A. "A C2 domain protein kinase initiates phagocytosis in the protozoan parasite Entamoeba histolytica." Nat. Commun. 2, 230 (2011)
5. Kumari V, Sharma R, Yadav VP, Gupta AK, Bhattacharya A , Bhattacharya S. "Differential distribution of a SINE element in the Entamoeba histolytica and Entamoeba dispar genomes: role of the LINE-encoded endonuclease”. BMC Genomics 12, 267 (2011)
6. Bharti R, Das, R, Sharma, P, Katoch, K. and Bhattacharya, A. (2011) MTCID: A database of genetic polymorphisms in clinical isolates of Mycobacterium tuberculosis. Tuberculosis (2012), doi:10.1016/j.tube.2011.12.001
7. Candida Vaz, Arvind Singh Mer, Alok Bhattacharya, Ramakrishna Ramaswamy (2011) "MicroRNAs Modulate the Dynamics of the NF-κB Signaling Pathway". PLoS ONE 6(11): e27774. doi:10.1371/journal.pone.0027774
8. Dhwani K. Desai, Soumyadeep Nandi, Prashant K. Srivastava, and Andrew M. Lynn, “ModEnzA: Accurate Identification of Metabolic Enzymes Using Function Specific Profile HMMs with Optimised Discrimination Threshold and Modified Emission Probabilities,” Advances in Bioinformatics, vol. 2011, Article ID 743782, 12 pages, 2011. doi:10.1155/2011/743782
9. Amit Rahi, Mohd Rehan, Rajni Garg, Deeksha Tripathi, Andrew M. Lynn, Rakesh Bhatnagar, Enzymatic characterization of Catalase from Bacillus anthracis and prediction of critical residues using information theoretic measure of Relative Entropy, Biochemical and Biophysical Research Communications, Volume 411, Issue 1, 22 July 2011, Pages 88-95, ISSN 0006-291X, 10.1016/j.bbrc.2011.06.099.
10. Ejaz Ahmad, Gulam Rabbani, Nida Zaidi, Saurabh Singh, Mohd Rehan, Mohd Moin Khan,Shah Kamranur Rahman, Zainuddin Qadri, Mohd. Shadab, Mohd. Tashfeen Ashraf, Naidu Subbarao, Rajiv Bhat and Rizwan Hasan Khan, "selectivity of Human Serum Albumin to Enantiomeric and Isoelectronic Pollutants Dissected by Spectroscopy, Calorimetry and Bioinformatics", Accepted PloS ONE(2011)
11. Isha Nagpal, N.Subbarao, S.Gourinath, Virtual Screening of potential inhibitors against O-acetylserine sulfhydrylase of Entamoeba histolytica of Cysteine Biosynthetic pathway, Accepted for publication in PLOS One journal,2011.
12. Vishvanath, Isha Nagpal, N.Subbarao and M.Rajeswari, In-silico modeling of a novel OXA-51 from β-lactam-resistant Acinetobacter baumannii and its interaction with various antibiotics Accepted for publication in Journal of Molecular Modeling.
13. Dhar, Suman; Nitharwal, Ram Gopal; Verma, Vijay; Subbarao, Naidu; Dasgupta, Santanu; Choudhury, Nirupam "DNA binding activity of Helicobacter pylori DnaB helicase:the role of N-terminal domain in modulating DNA binding activities",Accepted FEBS Journal (2011)
14. Kushal Shah and A. Krishnamachari. "On the origin of three base periodicity in genomes", BioSystems (accepted)
15. Ashish Gupta and Lovekesh Vig , "A dual association model for Acquisition and Extinction", Man Machine and Beyond, Italian Association of Artificial Intelligence, Palermo, 2011.
16. Ashish Gupta, Lovekesh Vig and David C. Noelle, "A Cognitive Model for generalization during Sequential Learning", Journal of Robotics, Special Issue on Cognitive and Neural Aspects, 2011
17. Kushal Shah and A. Krishnamachari. "Nucleotide correlation based measure for identifying origin of replication in genomic sequences", BioSystems (accepted)
18. Lovekesh Vig, Ashish Gupta and Abhinandan Basu. "On the Relation between Hunger, Dopamine and Action Rate",In Proceedings of the Fourth Indian International Conference on Artificial Intelligence, 2011.
19. Lovekesh Vig, Ashish Gupta and Abhinandan Basu, “A Neurocomputational model for the role of hunger in Dopamine mediated actions”, Journal of Intelligent Systems (Accepted, in Press)
20. Manoj Aggarwal,Lovekesh Vig, and Naveen Kumar, “A Multiple Objective approach to robot Coalition Formation”, Internationaal Conference of Intelligent Robotic Application , Aachen, 2011.
21. Ashish Gupta, Lovekesh Vig and David C. Noelle, “A Dual Association Model for the Extinction of Animal Conditioning”, Neurocomputing 74 (2011), pp. 3531-3542
22. Sudhanshu Shanker and Pradipta Bandyopadhyay . "Monte Carlo Temperature Basin Paving with Effective Fragment Potential: An Efficient and Fast Method for Finding Low Energy Structures of Water Clusters (H2O)20 and (H2O)25", J. Phys. Chem. A, 115 (42), 11866–11875 (2011)
23. Priya Singh, Subir K. Sarkar and Pradipta Bandyopadhyay . "Understanding the applicability and limitations of Wang–Landau method for biomolecules: Met-enkephalin and Trp-cage", Chem. Phys. Lett. 514, 357–361 (2011).
24. Smriti Sharma and Pradipta Bandyopadhyay. "Investigation of the acylation mechanism of class C beta-lactamase: pKa calculation, Molecular Dynamics simulation and quantum mechanical calculation", J. Mol. Modeling (In Press)
25. K.Shah, V.Gelfreic, V.Rom-Kedar, D.Turaev. "Robust exponential acceleration in time-dependent billiards", Physical Review Letters 106, 074101 (2011).
26. K.Shah. "Energy growth rate in smoothly oscillating billiards", Physical Review E 83, 046215 (2011).
27. Hemant R. Kushwaha, Gautam Kumar, Praveen Verma, Sneh L. Singla-Pareek, Ashwani Pareek. "Analysis of a salinity induced BjSOS3 protein from Brassica indicate it to be structurally and functionally related to its ortholog from Arabidopsis" Plant Physiology and Biochemistry, 2011 (Accepted)
28. Varshney A, Rehan M, Rabbani G, Khan RH, Subbarao N "Elimination of Endogenous Toxin, Creatinine from Blood Plasma Depends on Albumin Conformation: Site Specific Uremic Toxicity & Impaired Drug Binding". PLoS ONE | February 2011 | Volume 6 | Issue 2 | e17230
29. Kumar S, Raj I, Nagpal I, Subbarao N and Gourinath S. "Structural and biochemical studies of Serine Acetyltransferase reveal why the parasite Entamoeba histolytica cannot form Cysteine Synthase complex". JBC, February, 2011. in Press.
30. Bandyopadhyay P,Hungyo Kharerin , "Monte Carlo Energy Landscape Paving and Basin Paving simulation of RNA T-loop hairpin". Chem. Phys.Lett., 502, 130 (2011).
31. Indira Ghosh, Proteins will Fold Anyway!!, Journal of Biomolecular Structure & Dynamics, Volume 28, Issue Number 4, February 2011
32. Anirban Banerji & Indira Ghosh, "Mathematical criteria to observe mesoscopic emergence of protein biochemical properties", in J Math Chem (2011) 49:643–665
33. Biyani N, Mandal S, Seth C, Saint M, Natarajan K, Indira Ghosh, Madhubala R;. Characterization of Leishmania donovani aquaporins shows presence of subcellular aquaporins similar to tonoplast intrinsic proteins of plants. PLoS One. (2011);6(9):e24820.
34. Vikram Singh and Rama Ramaswamy, Spectral analysis of long noncoding RNAs, International Conference on BioInformatics and Computational Biology, BICB 2011, B31–B38. (ISBN: 978-981-08-8119-1)
35. Kumar G, Kushwaha HR , Purty RS, Kumari S, Singla-Pareek SL, Pareek A. Cloning, Structural and Expression Analysis of OsSOS2 in Contrasting Cultivars of Rice under Salinity Stress. Genes, Genomes and Genomics, 2011, Vol. 5.
36. Kushwaha HR, Singla-Pareek SL, Sopory SK, Pareek A. Understanding the "Commoneome" operative in plants in response to various abiotic Stresses. In: Improving Crop Resistance to Abiotic Stress. ed. Tuteja et. al.(Wiley-Blackwell, Wiley-VCH Verlag GmbH & Co., Germany),2011

 

 

 

 

Journals/Research Articles

2010

1. K.Shah. "Asymptotic solution of Fokker-Planck equation for plasma in Paul traps", Physics of Plasmas 17,054501 (2010).
2. K.Shah. "Plasma response to nonlinear time-periodic electric fields in one dimension", Phys. Plasmas 17, 112301 (2010).
3. K.Shah, D. Turaev and V. Rom-Kedar. "Fermi AccelerationExponential energy growth in a Fermi accelerator", Physical Review E 81, 056205 (2010).
4. Manish Agarwal, Hemant R. Kushwaha,Charusita Chakravarty. “Local Order, Energy, and Mobility of Water Molecules in the Hydration Shell of Small Peptides”. Journal of Physical Chemistry B, 114, 651 (2010)
5. Khan SN, Yennamalli R, Subbarao N, Khan AU, “ Mitoxantrone Induced Impediment of Histone Acetylation and Structural Flexibility of the Protein.”, Cell Biochem Biophys. 2010 Dec 8. doi : 10.1007/s12013-010-9141-9
6. Srinivasan A and Ramakrishnan G., “Parameter screening and selection for ILP using Designed Experiments. 19th International Conference on Inductive Logic Programming”. Lecture Notes in Computer Science LNCS 5989, Springer (to appear), 2010.
7. Bandyopadhyay P. “Efficient conformational sampling by Monte Carlo Basin Paving method: Distribution of minima on the energy surface of (H2O)20 and (H2O)50”. Chem. Phys. Lett. 487, 133, 2010.
8. Singh TU, Jafri HH and Ramaswamy R. “Transition to weak generalized synchrony in chaotically driven flows”. Physical Review, E 81, 016208-1—7, 2010.
9. Agrawal M, Prasad A and Ramaswamy R. ”Quasiperiodic forcing of coupled chaotic systems”. Physical Review, E 81, 026202-1—6, 2010.
10. Prasad A, Dhamala M, Adhikari BM, and Ramaswamy R. “Amplitude death in nonlinear oscillators with nonlinear coupling”. Physical Review, E 81, 027201-1—4, 2010. Cruz JM, Escalona J, Parmananda P, Karnatak R, Prasad A, and Ramaswamy R. “The phase--flip transition in coupled electrochemical cells”. Physical Review E 81, 046213-1—4, 2010.
11. Gupta R, Greco D, Auvinen P and Arjas E. “Bayesian integrated modeling of expression data: A case study on RhoG”. Accepted BMC Bioinformatics, 2010.
12. RajKumar Brojen Singh, Vikram Singh and Ram Ramaswamy “Stochastic Synchronization of Circadian Rythms, Journal of Systems Sciences and Complexity” (2010) 23: 978–988
13. Banerji A & Indira Ghosh Revisiting the Myths of Protein Interior: "Studying Proteins with Mass-Fractal Hydrophobicity-Fractal and Polarizability-Fractal Dimensions" in PLoS ONE 4(10): e7361. oi:10.1371/journal.pone.0007361 (2010)
14. Aditi Borkar, Indira Ghosh, Dhananjay Bhattacharyya,"Structure and Dynamics of Double Helical DNA in Torsion Angle Hyperspace:" A Molecular Mechanics Approach, in Journal of Biomolecular Structure &Dynamics, Volume 27, Issue Number 5, (2010).
15. Nidhi Puri, Om Prakash, Raman Manoharlal, Monika Sharma, Indira Ghosh and Rajendra Prasad "Analysis of physico-chemical properties of substrates of ABC and MFS multidrug transporters of pathogenic Candida albicans", in European Journal of Medicinal Chemistry , Vol. 45, Issue 11, November 2010, 4813-4826)
16. Anirban Banerji and Indira Ghosh, "Mathematical criteria to observe mesoscopic emergence of protein biochemical properties", in J Math Chem Nov (2010) :DOI 10.1007/s10910-010-9760-9
17. Kapoor K, Rehan M and A.M.Lynn Prasad R, Employing information theoretic measures and mutagenesis to identify residues critical for drug-proton antiport function in Mdr1p of Candida albicans., PLoS ONE 5(6): e11041. doi:10.1371/journal.pone.0011041
18. Dhaneswar Prusty, Ashraf Dar, Rashmi Priya, Atul Sharma, Srikanta Dana, Nirupam Roy Choudhury, N. Subba Rao and Suman Kumar Dhar, “Single-stranded DNA binding protein from human malarial parasite Plasmodium falciparum is encoded in the nucleus and targeted to the apicoplast” , Nucleic Acids Research, 2010, 1-17 doi:10.1093/nar/gkq565
19. Shashank Hambarde, Ragothaman M. Yennamalli , Naidu Subbarao , Sudhir Chandna; "Predictive inference on cytoplasmic and mitochondrial thioredoxin peroxidases in the highly radioresistant Lepidopteran insect Spodoptera frugiperda", Bioinformation 4: 399-404, 2010
20. Mobashar Hussain Urf Turabe Fazil, Sunil Kumar, Naidu Subbarao , Haushila Prasad Pandey, Durg Vijai Singh, "Homology modelling of a sensor histidine kinase from Aeromonas hydrophila", Journal of Molecular Modeling 16:1003–1009, 2010
21. Ankita Varshney, Priyankar Sen, Ejaz Ahmad, Mohd. Rehan, Naidu Subbarao , Rizwan Hasan Khan, "Ligand binding strategies of human serum albumin: How can the cargo be utilized?", Chirality 22:77-87, 2010
22. Vaz C, Ahmad H M, Sharma P, Gupta R, Kumar L, Kulshreshtha R, Bhattacharya A.Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood.BMC Genomics 2010, 11:288.
23. Agarwal S, Vaz C, Bhattacharya A, Srinivasan A.Prediction of novel precursor miRNAs using a context-sensitive hidden Markov model (CSHMM).BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S29.

   2009

1. Das S, Vishnoi A, and Bhattacharya A ; ABWGAT: Anchor Based Whole Genome Analysis Tool . Bioinformatics Advance Access published on October 14, 2009. doi:10.1093/bioinformatics/btp587
2. Singh P, Bandyopadhyay P, Bhattacharya S, Krishnamachari A and Sengupta S “ Riboswitch detection using profile Hidden Markov Models ” . BMC Bioinformatics 2009, 10:325
3. Vinekar R and Ghosh I “Determination of Phosphorylation Sites for NADP-specific Isocitratedehydrogenase from Mycobacterium tuberculosis”. Journal of Biomolecular Structure & Dynamics, Volume 26, Issue Number 6, p 663-895 (June 2009)
4. Kampmann T, Yennamalli R , Campbell P, Stoermer MJ,Fairlie DP, Kobe B and Young PR. “ In silico screening of small molecule libraries using the dengue virus envelope E protein has identified compounds with antiviral activity against multiple flaviviruses” , Antiviral Res. (2009).
5. Das S*, Yennamalli RM*, Vishnoi A*,Gupta P and Bhattacharya A. “Single nucleotide variations associated with Mycobacterium tuberculosis KZN strains” , Journal of Biosciences, 2009 (Accepted for publication) (* Equal contribution)
6. Banerji A, Ghosh I. “A new computational model to study mass inhomogeneity and hydrophobicity inhomogeneity in Proteins”, European Biophysics Journal, 2009(Feb.)
7. Vishnoi A, Srivastava A, Roy R,  Bhattacharya A. “MGDD: Mycobacterium tuberculosis genome diversity database”, BMC Genomics  9:373, (2009) doi:10.1186/1471-2164-9-373
8. Prasad A, Agrawal M and Ramaswamy R. “ Strange nonchaotic attractors in driven delay–dynamics in Nonlinear Dynamics”, ( Chapters in Book) Eds. M. Daniel and S. Rajasekar (Narosa, New Delhi 2009) pp 299–304.
9. Bandyopadhyay P, Kuntz ID. “Computational investigation of kinetics of cross-linking reactions in proteins: importance in structure prediction ”Biopolymers, 91, 68, (2009)
10. Meher BR, Kumar MVS, Bandyopadhyay P. “Molecular Dynamics simulation of HIV-protease with polarizable and non-polarizable force fields” . Indian Journal of Physics, 2009,83, 81(invited article).
11. Vashist J,Vishvanath, Kapoor R, Kapil A, Yennamalli R, Subbarao N , Rajeswari MR.“Interaction of nalidixic acid and ciprofloxacin with wild type and mutated quinolone-resistance-determining region of DNA gyrase A” . Indian J Biochem. Biophys., 2009,46(2):147-53.
12. Nandi A, Vaz C, Bhattacharya A and Ramaswamy R . “ miRNA regulated dynamics in circadian oscillator models” . BMC Systems Biology 2009, 3:45
13. Kushwaha HR, Singh AK, Sopory SK, Singla-Pareek SL and Pareek A. “Genome wide expression analysis of CBS domain containing proteins in Arabidopsis thaliana (L.) Heynh and Oryza sativa  L.  reveals their developmental and stress regulation” .BMC Genomics 2009, 28;10:200.
14. Sabharwal KS VP, Kushwaha HR, Sopory SK, Singla-Pareek SL, Pareek A. “Transcriptome map for seedling stage specific salinity stress response indicates a specific set of genes as candidate for saline tolerance in Oryza sativa L. ” . Funct Integr Genomics. 2009 Feb;9(1):109-23. Epub 2008 Jul 2.
15. Yennamalli R, Subbarao N, Kampmann T, McGeary RP, Young PR, Kobe B.“Identification of novel target sites and an inhibitor of the dengue virus E protein” . J Comput. Aided Mol. Des., 2009, (pub ahead of print)..
16. Sahni NS,Piepel GF, and Naes T. “Product and Process Improvement Using Mixture-Process Variable Methods and Robust Optimization Techniques ”.Journal of Quality Technology. 2009,41(2).
17. Kelkar A, Vivek T, Ramaswamy R, Deobagkar D. “Characterisation of inactivation domains and evolutionary strata in Human X chromosome through Markov segmentation”.PloS One,2009.

   2008

1. .Lyakhov IG., Krishnamachari A , and Thomas D. Schneider (2008). “Discovery of novel tumor suppressor p53 response elements using information theory Nucleic Acids Research 36(11):3828-33
2. Hosseini A., Ranade SH., Ghosh I., Khandekar P. “Simple sequence repeats in different genome sequences of Shigella and comparison with high GC and AT-rich genomes”, DNA Seq. 2008, 19(3):167-76.
3. Khan SN, Islam B, Yennamalli R, Zia Q, Subbarao N, Khan AU."Characterization of doxorubicin binding site and drug induced alteration in the functionally important structural state of oxyhemoglobin", J Pharm Biomed Anal. 2008, 48(4):1096-104(Dec).
4. Khan SN, Islam B, Yennamalli R, Sultan A, Subbarao N, Khan AU, "Interaction of mitoxantrone with human serum albumin: spectroscopic and molecular modeling studies", European Journal of Pharmaceutical Sciences, 2008, 35(5):371-82 (Dec).
5. Oswal N, Sahni NS, Bhattacharya A, Komath SS. and Muthuswami R “Unique motifs identification of A proteins from glycosyltransferases of the GT4 family” , BMC Evolutionary Biology.
6. Tyagi S, Vaz C,Gupta V, Bhatia R, Maheswari S, Srinivasan A and Bhattacharya A “CID-miRNA: A web server for prediction of novel miRNA precursors in human genome.”Biochemical and Biophysical Research Communications (2008).
7. Singh A, Hemant R. Kushwaha and Sharma P. “Molecular modelling and comparative structural account of aspartyl beta-semialdehyde dehydrogenase of Mycobacterium tuberculosis (H37Rv)” . J Mol Model. 2008 Apr;14(4):249-63.
8. Mueller DS, kampmann T, Yennamalli R, Young PR and Kobe B and Mark AE (2008).“Histidine protonation and the activation of viral fusion proteins”. Biochemical Society Transactions 36, 43-45
9. Bandyopadhyay P. “Assessment of Two Surface Monte Carlo (TSMC) method to find stationary points of (H2O)15 and (H2O)20 clusters” . Theoretical Chemistry Accounts 120(1), 307-312. (2008)
10. Bandyopadhyay P. (2008). “Two-surface Monte Carlo with basin hopping: Quantum mechanical trajectory and multiple stationary points of water cluster”. The journal of chemical physics 128, 134103.
11. Guo X, Bandyopadhyay P, Schilling B, Young MM, Fujii N, Aynechi T, Guy K R , Kuntz ID, and Gibson BW(2008) “Partial Acetylation of Lysine Residues Improves Intraprotein Cross-Linking”. Analytical Chemistry.
12. Weber C, Blazquez S, Marion S, Ausseur C, Vats D, Krzeminski M, Rigothier S, Maroun RC, Bhattacharya A, Guillen N. (2008) “Bioinformatics and functional analysis of an Entamoeba histolytica mannosyltransferase necessary for parasite complement resistance and hepatical infection”. PloS Negl. Trop. Dis. 2(2), e165 (Feb 13, 2008). doi/10.1371/journal.pntd.0000165.
13. Aggarwal SM, Jain R, Bhattacharya A, Azam A. (2008). “Inhibitors of Escherichia coli serine acetyltransferase block proliferation of Entamoeba histolytica Trophozoites”. Int. J. Parasitol. 38, 136-141
14. A Nandi and  R Ramaswamy (2008). “Synchronization of Coupled Stochastic Oscillators: The effect of topology”. Pramana 70,  1065-74
15. C Bonhomme, P Renesto, S Nandi, A Lynn, D Raoult (2008). “Serological microarray for a paradoxical diagnostic of Whipple's disease”. Eur J Clin Microbiol Infect Dis. Jul 2.
16. Sahni, N.S., Piepel, G.F., N;s, T., Product and Process Improvement Using Mixture-Process Variable Methods and Robust Optimization Techniques
17. Vig L Multiple Robot Teaming: Coalition Formation: From Software Agents to Robots, VDM Verlag, (2008)
18. Godbole R,  Ramaswamy R, Lilavati's Daughters, “The women scientists of India”,  Indian Academy of Sciences, Bangalore: 2008.  ISBN: 9788186450051
19. Book

2007

1. Vig L and Adams JA. (2007). "Coalition Formation: From Software Agents to Robots". Journal of Robotic and Intelligent Systems.
2. Nandi A, Santosh G, Brojen Singh, R. K. and Ramaswamy R. (2007). “Effective mechanisms for the synchronization of stochastic oscillators”. Physical Review E. 76, 041136.
3. Banerjee D, Martin N, Nandi S, Shukla S, Dominguez A, Mukhopadhyay G, Prasad R. (Epub 2007 Jun 16), “A genomewide steroid response study of major human fungal pathogen Candida albicans”. Mycopathologia. 2007 Jul;164(1):117.
4. Azad RK, Lawrence J, Thakur V and Ramaswamy R. “Segmentation of Genomic DNA Sequences, in Advanced Computational Methods in Biocomputing and Bioimaging”, ed. by Tuan D. Pham et.al.,(Nova Science Publishers, NY, 2007).
5. Thakur V, Azad RK, Ramaswamy R. (2007). “Markov models of Genome segmentation” Physical Review E. 75, 011915.
6. Srivastava PK, Desai DK, Nandi S, Lynn A (2007). “HMM-ModE -  Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences”. BMC Bioinformatics. 8,104.
7. Vishnoi A, Roy R, Bhattacharya A (2007). “Comparative analysis of Bacterial genomes: Identification of divergent regions in Mycobacterial strains  using an anchor-based approach”. Nucleic Acid Res. 35, No 11, 3654-3667.
8. Stephen P, Vijayan R, Bhat A, Subbarao N, Bamezai RN (2007) Molecular “modeling on pyruvate phosphate dikinase of Entamoeba histolytica and in silico virtual screening for novel inhibitors”. J Comput Aided Mol Des. (Accepted)
9. Vijayan R, Subbarao N and Mallick BN (2007) “In silico Modeling of a1A-Adrenoceptor: Interaction of its Normal and Mutated Active Sites with Noradrenaline as well as its Agonist and Antagonist”. American Journal of Biochemistry and Biotechnology 3 (4): 216-224, 2007
10. Sengupta S and A Rutenberg. (2007) “Modeling partitioning of Min proteins between daughter cells after septation in Escherichia coli”. Phys. Biol. 4:145-153
11. Sengupta S, X. Yang and Paul G. Higgs (2007) “The Mechanisms of Codon Reassignments in Mitochondrial Genetic Codes” J. Mol. Evol. 64:662-688 (2007).

2006

1. K Gupta, H P Singh, B Biswal, and R Ramaswamy (2006). Adaptive targeting of chaotic response in periodically stimulated neural systems Chaos 16: 023116-17
2. G Alexe, G S Dalgin, R Ramaswamy, C Delisi and G Bhanot  (2006). Data perturbation independent diagnosis and validation of breast-cancer subtypes using   clustering and patterns Cancer Informatics Online; 2: 243;74
3. Naes T., Aastveit, A. And Sahni, N.S. (2006) Analysis of split-plot designs: an overview and comparison of methods, Quality and Reliability Engineering International.
4. Lovekesh Vig and Julie A. Adams (2006).  Multi-Robot Coalition Formation, IEEE Transactions on Robotics, 22 (4)
5. Lovekesh Vig and Julie A. Adams (2006).  Market Based Multi-Robot Coalition Formation, Distributed Autonomous Robotic Systems ( DARS), Minneapolis, editors   R. Voyles and M. Gini,
6. Krishnamachari A, Srinivas T, Sanadhya SK and Balasundaram S (2006). Perceptron Decision Tree Model for E.coli Promoters. Proceedings of IncoB 2006, New Delhi
7. Mandal, P.K., Rawal, K., Ramaswamy, R., Bhattacharya, A., Bhattacharya, S. (2006). Identification of insertion hot spots for non-LTR retrotransposons: computational and biochemical application to Entamoeba histolytica. Nucleic Acids Res. 34,5752-63.
8. Haimovich, A. D., Byrne B., Ramaswamy R., Welsh, W. J. (2006) Wavelet Analysis   of DNA Walks J Comput Biol.  13, 1289-1298.
9. Mehra, A., Fredrick, J., Petri, W. A. Jr, Bhattacharya, S., Bhattacharya, A., (2006) Expression and function of a family of transmembrane kinases from the protozoan parasite Entamoeba histolytica. Infect Immun. 74, 5341-51.
10. Bhattacharya, A., Padhan, N., Jain, R., Bhattacharya, S. (2006) Calcium-binding proteins of Entamoeba histolytica. Arch Med Res. 37,221-5.
11. Pandey, S. P., Krishnamachari A. (2006) Computational analysis of plant RNA Pol-II promoters. BioSystems. 83, 38-50.
12. Pareek, A., Singh, A., Kumar, M., Kushwaha, H. R., Lynn, A. M., Singla-Pareek, S. L. (2006) Whole-genome analysis of Oryza sativa reveals similar architecture of two-component signaling machinery with Arabidopsis. Plant Physiol. 142, 380-97.
13. Desai, D. K., Srivastava, P., Lynn, A. M.. Identifying drug targets from metabolic enzymes, Proceedings of the National Seminar and Workshop on Bioinformatics and Computational Biology-2006, held at Mahila Mahavidyalaya, Banaras Hindu University, Varanasi March 22-24, 2006.

     2005

1. R Ramaswamy (2005). The natural effectiveness of mathematics in the biological sciences. Current Science (Bangalore) 2005; 88: 38187
2. Sahni N.S., Sharma P., Tibshirani R.; Array based detection of cancer based on gene-expression patterns in peripherial blood cells Breast Cancer Research 7, 2005.
3. Sahni N.S., Aastveit A., & Naes T.;In-line process and product control using spectroscopy and multivariate calibration; Journal of Quality Technology 37(1)
4. Sahni N.S., Isaksson T., and Naes T.; Comparison of methods for transfer of calibration models in near-infared spectroscopy : A case study based on correcting path length differences using fiber-optic transmittance probes in in-line near-infrared spectroscopy. Applied spectroscopy ISSN 0003-7028 CODEN APSPA4
5. Lovekesh Vig and Julie A. Adams (2005).  "Issues in Multi-Robot Coalition Formation", Third International Multi-Robot Systems Workshop, From Swarms to Intelligent Automata, Washington D. C., editors Lynne E. Parker, Frank E. Schneider and Allan C. Schultz.
6. Lovekesh Vig and Julie A. Adams (2005).  "A Framework for Multi-Robot Coalition Formation", In the Proceedings of the second Indian International Conference on   Artificial Intelligence, Pune, India.
7. Gourinath, S., Padhan, N., Alam N., Bhattacharya, A. (2005) Crystallization and preliminary crystallographic analysis of calcium-binding protein-2 from Entamoeba histolytica and its complexes with strontium and the IQ1 motif of myosin V. Acta Crystallograph 61,417-20.
8. Loftus, B., Anderson, I., Davies, R., Alsmark, U. C., Samuelson, J., Amedeo, P., Roncaglia, P., Berriman, M., Hirt, R. P., Mann, B. J., Nozaki, T., Suh, B., Pop, M., Duchene, M., Ackers, J., Tannich, E.,  Leippe, M., Hofer, M., Bruchhaus, I., Willhoeft, U., Bhattacharya, A., Chillingworth, T., Churcher, C., Hance, Z., Harris, B., Harris,    D., Jagels, K., Moule, S., Mungall, K., Ormond, D., Squares, R., Whitehead, S., Quail,     M. A., Rabbinowitsch, E., Norbertczak, H., Price, C., Wang, Z., Guillen, N., Gilchrist, C., Stroup, S. E., Bhattacharya, S., Lohia, A., Foster, P. G., Sicheritz-Ponten, T., Weber, C., Singh, U., Mukherjee, C., El-Sayed, N. M., Petri, W. A. Jr., Clark, C. G., Embley, T. M., Barrell, B., Fraser, C. M., Hall, N. (2005) The genome of the protist parasite Entamoeba histolytica. Nature. 433,865-8.
9. Nandi, S., Mehra, N., Lynn, A. M., Bhattacharya, A. (2005) Comparison of theoretical proteomes: Identification of COGs with conserved and variable pI within the multimodal pI distribution BMC Genomics. 6, 116.
10. Vats, D., Vishwakarma, R. A., Bhattacharya, S., Bhattacharya, A. (2005) Reduction of cell surface glycosylphosphatidylinositol conjugates in Entamoeba histolytica by antisense blocking of E. histolytica GlcNAc-phosphatidylinositol deacetylase expression: effect on cell proliferation, endocytosis, and adhesion to target cells. Infect   Immun. 73, 8381-92.
11. Bakre, A. A., Rawal, K., Ramaswamy, R., Bhattacharya, A., Bhattacharya, S. The LINEs and SINEs of Entamoeba histolytica: comparative analysis and genomic distribution. Exp Parasitol. 110, 207-13.
12. Bansal-Mutalik, R., Mustafi, S. M., Bhattacharya, A., Chary, K. V. (2005) Sequence specific 1HN, 13C and 15N resonance assignments of a novel calcium-binding protein from Entamoeba histolytica. J Biomol NMR. 31, 379-80.
13. Deswal, R., Singh, R., Lynn, A. M., Frank, R. (2005) Identification of immunodominant regions of Brassica juncea glyoxalase I as potential antitumor immunomodulation targets. Peptides. 26, 395-404.
14. Sharma, P., Sahni, N. S., Tibshirani, R., Skaane, P., Urdal, P., Berghagen, H., Jensen, M., Kristiansen, L., Moen, C., Sharma, P., Zaka, A., Arnes, J., Sauer, T., Akslen, L. A., Schlichting, E., Borresen-Dale, A. L., Lonneborg. A. (2005) Early detection of breast cancer based on gene-expression patterns in peripheral blood cells. Breast Cancer Res. 7, R634-44.
15. Sahni, N. S., Isaksson, T., Naes, T. (2005) Comparison of methods for transfer of calibration models in near-infared spectroscopy: a case study based on correcting path length differences using fiber-optic transmittance probes in in-line near-infrared spectroscopy. Appl Spectrosc. 59, 487-95.
16. Agarwal, S. M. (2005) Evolutionary rate variation in eukaryotic lineage specific human intronless proteins. Biochem Biophys Res Commun. 337, 1192-7.
17. Agarwal, S. M., Gupta, J. (2005) Comparative analysis of human intronless proteins. Biochem Biophys Res Commun. 331, 512-9.

      2004

1. Sahni, N.S., Isaksson, T., and Naes, T. (2004).; In-line near infrared spectroscopy in product and process monitoring in the food industry, Journal of NIR spectroscopy.
2. Krishnamachari, A., moy Mandal, V., Karmeshu. (2004) Study of DNA binding sites using the Renyi parametric entropy measure. J Theor Biol. 227, 429-36.
3. Karmeshu and Krishnamachari "Sequence variability and long-range dependence in DNA: An Information theoretic perspective" Lecture notes in Computer Science. Vol. 3316, p1354, 2004. Springer Publications.
4. Mandal, P. K., Bagchi, A., Bhattacharya, A., Bhattacharya, S. (2004) An Entamoeba histolytica LINE/SINE pair inserts at common target sites cleaved by the restriction enzyme-like LINE-encoded endonuclease. Eukaryot Cell. 2004 3, 170-9.
5. Chakrabarty, P., Sethi, D. K., Padhan, N., Kaur, K. J., Salunke, D. M., Bhattacharya, S., Bhattacharya, A. (2004) Identification and characterization of EhCaBP2. A second member of the calcium-binding protein family of the protozoan parasite Entamoeba histolytica. J Biol Chem. 279, 12898-908
6. Sharma, D., Issac, B., Raghava, G. P., Ramaswamy, R. (2004) Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation. Bioinformatics. 20, 1405-12.
7. Singh, B.K., Subba Rao, J., Ramaswamy, R., Sinha, S. (2004) The role of heterogeneity on the spatiotemporal dynamics of host-parasite metapopulation. Ecolo. Modeling. 180. 435-443.

      2003

1. R Ramaswamy and R K Azad (2003). Analysis of DNA sequences through segmentation: Exploring the mosaic via statistical measures Physica Scripta 2003; T106: 2125
2. Satish, S., Bakre, A. A., Bhattacharya, S., Bhattacharya, A. (2003) Stress-dependent expression of a polymorphic, charged antigen in the protozoan parasite Entamoeba  histolytica. Infect Immun. 71, 4472-86.
3. Bhattacharya, A., Bhattacharya, S., Ackers, J. P. (2003) Nontranslated polyadenylated RNAs from Entamoeba histolytica. Trends Parasitol. 19, 286-9.
4. Ghosh, S, Satish, S., Tyagi, S., Bhattacharya, A., Bhattacharya, S. Differential use of  multiple replication origins in the ribosomal DNA episome of the protozoan parasite Entamoeba histolytica. Nucleic Acids Res. 31, 2035-44.
5. Jha, S., Karnani, N., Lynn, A. M., Prasad, R. (2003) Covalent modification of cysteine 193 impairs ATPase function of nucleotide-binding domain of a Candida drug efflux pump. Biochem Biophys Res Commun.310, 869-75.

      2002

1. G Aggarwal and R Ramaswamy (2002). Ab-initio gene prediction: Prokaryote Genome annotation with GLIMMER and GeneScan, Journal of Biosciences (Supplement 1); 27: 7 14
2. Bhattacharya, S., Bakre, A., Bhattacharya, A. (2002) Mobile genetic elements in protozoan parasites. J Genet. 81, 73-86.
3. Azad, R.K., Subba Rao, J., Li, W., Ramaswamy, R. (2002) Simplifying the mosaic description of DNA sequence. Phys. Rev., E 66 (3), 031913.
4. Azad, R.K., Pernola-Galvan, P., Ramaswamy, R., Subba Rao, J. (2002) Segmentation of Genomic DNA through entropic divergenceL Power laws and Scaling. Phys. Rev., E 65 (5), 051909.