Resources & Support
SERVICES PROVIDED BY CCBB-
The Services provided by the Centre can be summarized as follows:
- Sequence analysis.
- Routine sequence analysis support software is provided to the user community by the scientific staff.
- National Facility for molecular modeling (Northern Region). Used for training during workshops and research by groups on campus
- Mirror Biological data for use on BioGRID.
- High-performance computational facilities along with university facility.
FACILITIES AVAILABLE AT CCBB
A. Computational Facilities
System
Operating system
Application
Quantity
SGI Altix 350 Linux Genome Sequence Analysis and Molecular Modeling 1 48 processor Opteron cluster SUN v20Z High Performance Computing 1 Xeon Linux Molecular Modelling and Simulation, Web Server 2 SUN Enterprise Server E420R
Solaris
Large scale Sequence analysis, Hosting Biological databases
8
DEC Alpha Server
Digital Unix
Sequence Analysis, Training
2
SGI - Octane
IRIX 6.5
Molecular Modeling and simulation
1
SGI - O2
IRIX 6.5
Molecular modeling and simulation, Teaching
4
B. Software
Software
Application
Adobe Acrobat 5.0
PDF Read/Writer
Adobe Illustrator 7.0
Graphics Designing
Adobe Photoshop
Graphics Designing
Adobe PageMaker 6.0
Desktop Publisher
Amber 7
Molecular Simulation programs
Chem Office
Drawing, Modeling,MSDX, ACX
Chems 32
OpenMP Compiler with suitable performance & necessary support for reasearch
CHARMM & AMBER
Molecular dynamics simulation
Corina 2.6
Molecular Networks GmbH (Structure Generator)
Discovery Studio, Modeling, MedChem
Discovery studio
Dragon
Descriptor for QSAR
Front Page
Web designing
FlexX
Docking & scoring SW
Gold
Docking SW
GROMOS 96
Biomolecular simulation software
MATLAB (Win/Linux)
Mathematical software
Mathematica
Mathematical software
MOE 2002.03
Databases
MS Insight II 98.0
Accelrys Scientifc Business Intelligence Software - Discovery Studio Free
Oracel 10G
Databases designing
PC Cillin 200 Anti Virus
Anti virus
QCPE
Quantum Chemistry Programme Exchange
Schrodinger
Molecular Modeling
Sigma Plot 8.2
Exact Graphs & Data Analysis
Sigma Stat 2.0.3
Statistical calculation
Smar Cop 3.4
Anti virus
SYBYL (limited )
Computational Informatics Software for Molecular Modelers
Visual Basic 6.0
Database desiging
Visual C++
Programming compiler
WHATIF
In Silico Macromolecular structure
Explain™
Biobase Database online access
ADF
Quantum chemistry programs
C. Internet Connectivity:Our host organization has high speed connectivity with bandwidth of 28 Mbps (16+12) through Software Technology Park of India (STPI), Noida and ERNET. A optical fiber based campus wide area network is fully functional since 2000. Beside this, SIT – JNU is part of the BIO-GRID project of DBT with a ERNET connection of 2 Mbps connecting all major Bioinformatics Centre, and a shared internet bandwidth of 4Mpbs.
Video Conferencing, Distance Learning Facility, Network Lab for students and researchers and a specialized library are the part of the center.